Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2561

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10929 and 10930 are separated by 250 nucleotides mRNA_2561: 10929 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 446,568 to 451,968 10929 mRNA_2562: 10930 - Hypothetical Protein, at 452,219 to 453,821 10930

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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445,648 - +1.0
445,703 - +1.2
445,712 - +1.4
445,724 + +0.0
445,734 + +1.9
445,778 + +1.6
445,780 + -0.6
445,786 + +0.9
445,792 + -2.3
445,806 - -1.4
445,813 - -0.3
445,861 - -0.6
445,863 + -0.2
445,867 + -0.8
445,875 + -0.6
445,875 + -0.3
445,876 + -0.4
445,876 + -0.3
445,877 - -0.3
445,899 - +0.8
445,903 + -1.1
445,921 - +0.9
445,940 - +0.1
445,943 - -0.2
446,025 - +0.9
446,075 - -0.2
446,075 - -0.4
446,079 + +0.8
446,080 + -0.6
446,089 - -0.5
446,142 + -3.2
446,158 + -1.0
446,158 - +0.0
446,163 - -0.6
446,163 - -0.3
446,164 + -1.8
446,164 - +0.1
446,164 + -0.8
446,165 - -0.3
446,165 + -1.7
446,167 - -1.1
446,176 + +0.1
446,180 - +1.4
446,223 + +0.3
446,312 - +1.9
446,334 - -0.2
446,346 - -0.0
446,463 - +0.7
446,465 - -1.2
446,473 + -2.4
446,478 - -1.4
446,491 + +0.4
446,614 + +0.8
446,646 - +1.0
446,793 + +2.0
446,793 - -0.3
446,796 - -0.7
446,804 + +1.7
447,080 - -0.1
447,253 - 10929 mRNA_2561 0.13 +1.0
447,695 - 10929 mRNA_2561 0.21 -0.6
447,859 - 10929 mRNA_2561 0.24 -0.0
448,233 - 10929 mRNA_2561 0.31 -0.2
448,747 + 10929 mRNA_2561 0.40 +1.0
448,849 - 10929 mRNA_2561 0.42 +1.8
449,014 - 10929 mRNA_2561 0.45 +0.0
449,163 + 10929 mRNA_2561 0.48 -0.6
449,298 + 10929 mRNA_2561 0.51 -1.3
449,303 - 10929 mRNA_2561 0.51 -0.0
449,872 + 10929 mRNA_2561 0.61 -0.1
449,892 + 10929 mRNA_2561 0.62 -1.9
449,912 - 10929 mRNA_2561 0.62 +0.5
450,033 + 10929 mRNA_2561 0.64 +0.4
450,297 + 10929 mRNA_2561 0.69 -1.0
450,310 + 10929 mRNA_2561 0.69 +2.1
450,388 + 10929 mRNA_2561 0.71 +1.4
450,656 + 10929 mRNA_2561 0.76 +2.1
450,893 + 10929 mRNA_2561 0.80 -0.1
451,082 + 10929 mRNA_2561 0.84 +1.6
451,093 + 10929 mRNA_2561 0.84 +0.3
451,097 - 10929 mRNA_2561 0.84 +0.2
452,291 - -0.1
452,449 + 10930 mRNA_2562 0.14 +2.1
452,453 - 10930 mRNA_2562 0.15 +0.4
452,543 + 10930 mRNA_2562 0.20 +1.0
452,606 + 10930 mRNA_2562 0.24 -0.6
452,704 - 10930 mRNA_2562 0.30 -1.8
452,798 - 10930 mRNA_2562 0.36 +0.4

Or see this region's nucleotide sequence