Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2600

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10967 and 10968 are separated by 848 nucleotides10968 and 10969 are separated by 219 nucleotides mRNA_2599: 10967 - KOG2619 Fucosyltransferase, at 567,541 to 568,045 10967 mRNA_2600: 10968 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 568,894 to 570,450 10968 mRNA_2601: 10969 - Hypothetical Protein, at 570,670 to 572,190 10969

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
568,000 + -0.5
568,116 - -0.1
568,138 - +2.6
568,143 - -0.0
568,152 - +1.1
568,154 + +1.1
568,175 + +0.2
568,177 - +1.0
568,179 - -1.1
568,181 - -0.7
568,185 + +1.0
568,190 - +0.1
568,197 + -0.1
568,201 - -0.6
568,205 - -1.9
568,216 + -0.7
568,297 - -0.6
568,306 - +0.1
568,317 - +2.5
568,331 + -0.9
568,353 - -1.2
568,361 - +1.0
568,414 - +0.0
568,453 + -0.8
568,498 - -0.9
568,587 - -0.3
568,782 - -1.1
568,783 + +0.9
568,904 - -0.9
568,932 + +0.0
568,946 - -0.5
568,948 - -0.5
568,951 + -0.2
568,957 + -1.1
568,957 + -0.3
568,958 - -0.2
568,958 - -0.6
568,964 - -0.0
568,965 + -0.5
568,968 + +0.4
568,968 - -1.4
568,971 + +0.3
568,971 + -0.6
568,971 + +0.5
568,971 - -1.7
568,971 + -0.4
568,971 + +0.8
568,975 - -0.8
568,976 + +0.9
568,978 + +0.7
568,980 + +0.8
568,983 - +1.3
568,984 - -2.2
568,986 + +0.4
568,986 - -0.0
568,990 - -0.6
568,990 + +1.3
568,992 - -0.5
568,993 + -0.4
568,993 + +0.2
568,994 + -0.4
568,996 + -1.0
568,997 + +1.7
568,997 + +0.1
568,999 + +0.1
569,002 + -1.2
569,004 + +0.3
569,006 + -0.2
569,018 - +0.9
569,163 - 10968 mRNA_2600 0.17 +0.5
569,166 + 10968 mRNA_2600 0.17 +1.9
569,168 + 10968 mRNA_2600 0.18 +0.3
569,168 + 10968 mRNA_2600 0.18 +0.6
569,281 + 10968 mRNA_2600 0.25 -0.9
569,301 + 10968 mRNA_2600 0.26 -0.0
569,461 + 10968 mRNA_2600 0.36 -0.3
569,467 + 10968 mRNA_2600 0.37 -0.7
569,475 - 10968 mRNA_2600 0.37 -1.4
569,730 - 10968 mRNA_2600 0.54 -0.7
569,747 + 10968 mRNA_2600 0.55 -0.2
570,162 + 10968 mRNA_2600 0.81 +0.3
570,188 - 10968 mRNA_2600 0.83 -0.3
570,465 - -0.7
570,472 - -0.1
570,552 + -1.6
570,598 - +0.9
570,626 + -1.6
570,777 - +0.3
570,914 - 10969 mRNA_2601 0.16 -1.6
570,917 + 10969 mRNA_2601 0.16 -0.2
570,919 - 10969 mRNA_2601 0.16 -0.1
570,926 + 10969 mRNA_2601 0.17 -0.6
571,048 + 10969 mRNA_2601 0.25 +0.7
571,058 + 10969 mRNA_2601 0.26 +0.5
571,070 + 10969 mRNA_2601 0.26 -0.1
571,197 - 10969 mRNA_2601 0.35 -2.3
571,219 + 10969 mRNA_2601 0.36 -0.2

Or see this region's nucleotide sequence