Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2641

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11008 and 11009 are separated by 282 nucleotides11009 and 11010 are separated by 523 nucleotides mRNA_2640: 11008 - Hypothetical Protein, at 656,963 to 657,920 11008 mRNA_2641: 11009 - Hypothetical Protein, at 658,203 to 659,346 11009 mRNA_2642: 11010 - K17428 MRPL47, NCM1 large subunit ribosomal protein L47, at 659,870 to 660,906 11010

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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657,462 - 11008 mRNA_2640 0.52 -2.3
657,487 + 11008 mRNA_2640 0.55 -0.2
657,500 - 11008 mRNA_2640 0.56 -0.2
657,534 - 11008 mRNA_2640 0.60 +0.2
657,537 - 11008 mRNA_2640 0.60 -0.6
657,537 - 11008 mRNA_2640 0.60 +0.8
657,559 - 11008 mRNA_2640 0.62 -0.3
657,563 + 11008 mRNA_2640 0.63 +0.4
657,569 - 11008 mRNA_2640 0.63 +0.2
657,570 + 11008 mRNA_2640 0.63 -1.5
657,609 - 11008 mRNA_2640 0.67 +0.3
657,615 + 11008 mRNA_2640 0.68 -0.5
657,619 + 11008 mRNA_2640 0.68 -0.3
657,619 + 11008 mRNA_2640 0.68 -2.3
657,620 - 11008 mRNA_2640 0.69 +0.3
657,636 - 11008 mRNA_2640 0.70 -0.0
657,638 + 11008 mRNA_2640 0.70 +0.4
657,645 + 11008 mRNA_2640 0.71 +1.2
657,682 - 11008 mRNA_2640 0.75 +0.1
657,691 - 11008 mRNA_2640 0.76 +0.4
657,778 - 11008 mRNA_2640 0.85 +0.3
657,787 + 11008 mRNA_2640 0.86 -0.5
657,811 + 11008 mRNA_2640 0.89 +1.1
657,812 - 11008 mRNA_2640 0.89 +1.8
657,820 - 11008 mRNA_2640 0.89 +0.0
657,832 + -0.5
657,832 + +0.9
657,857 - -0.3
657,882 - -0.3
657,883 - -1.5
657,886 - +0.5
657,898 + -0.1
657,910 - +0.5
657,914 - -1.1
657,920 - +1.8
657,920 + -0.5
657,934 - +0.4
657,939 - +0.7
657,942 + +0.8
657,953 - +0.4
657,954 + -1.1
657,975 + +1.3
657,975 - -0.4
657,995 + +1.1
657,997 - -1.0
657,997 - -1.2
657,998 - -0.0
658,000 + +0.7
658,003 - -0.5
658,008 - +0.2
658,009 - -0.1
658,018 - -0.4
658,019 - +0.0
658,020 - +1.9
658,022 - +0.0
658,043 + +2.9
658,056 - -1.0
658,130 - +0.5
658,156 - +1.7
658,161 - +0.1
658,166 + +0.8
658,192 + -0.4
658,206 - +2.5
658,287 - -0.2
658,298 - +0.3
658,309 + -0.3
658,377 - 11009 mRNA_2641 0.15 +0.9
658,433 + 11009 mRNA_2641 0.20 +0.5
658,633 + 11009 mRNA_2641 0.38 -0.2
658,645 + 11009 mRNA_2641 0.39 -1.4
658,769 - 11009 mRNA_2641 0.49 +0.4
658,943 + 11009 mRNA_2641 0.65 -0.3
659,096 + 11009 mRNA_2641 0.78 -1.0
659,765 - +1.1
659,938 + -0.1
659,960 - -0.8

Or see this region's nucleotide sequence