Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2654

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11022 and 11023 are separated by 403 nucleotides mRNA_2654: 11022 - K00864 glpK, GK glycerol kinase, at 685,161 to 688,307 11022 mRNA_2655: 11023 - HMMPfam-Protein of unknown function (DUF1479)-PF07350,SUPERFAMILY--SSF51197, at 688,711 to 690,606 11023

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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684,181 - +2.4
684,182 - -2.2
684,312 - -0.6
684,328 + +0.8
684,329 - +0.9
684,475 - -0.6
684,480 + -1.8
684,588 + -0.3
684,596 - +0.1
684,774 - +2.0
684,903 + +1.4
684,903 - -1.6
684,906 + +1.4
684,907 + -0.5
684,922 + -2.5
684,923 - +2.1
684,935 + -0.4
685,038 + +1.1
685,038 - +1.1
685,038 - +1.0
685,039 + +1.7
685,045 - +0.1
685,048 + -0.1
685,063 - +0.6
685,068 + +0.1
685,068 + +0.7
685,068 + -0.8
685,069 + -1.5
685,072 + +0.6
685,081 + +0.8
685,081 + -0.2
685,097 + +0.2
685,097 - -0.5
685,103 + +0.1
685,107 - +0.3
685,111 + +0.3
685,120 - +0.0
685,128 - +1.2
685,203 - +0.7
685,274 + -0.7
685,274 + +0.2
685,277 + +0.0
685,289 + -3.9
685,298 + +0.2
685,385 - -0.7
685,431 - +0.7
685,433 + +2.6
685,510 - 11022 mRNA_2654 0.11 -0.2
685,562 + 11022 mRNA_2654 0.13 +0.2
685,710 - 11022 mRNA_2654 0.17 +1.8
686,277 - 11022 mRNA_2654 0.35 +1.2
686,288 - 11022 mRNA_2654 0.36 +0.2
686,336 - 11022 mRNA_2654 0.37 +1.2
686,606 + 11022 mRNA_2654 0.46 +1.1
686,711 - 11022 mRNA_2654 0.49 +1.4
686,727 - 11022 mRNA_2654 0.50 +2.2
686,736 - 11022 mRNA_2654 0.50 +0.2
687,027 + 11022 mRNA_2654 0.59 -1.2
687,180 + 11022 mRNA_2654 0.64 -0.2
688,160 + +1.6
688,230 - -1.2
688,323 + +0.4
688,374 - +1.6
688,410 - +1.5
688,573 - -0.0
688,574 - +1.1
688,577 - -0.0
688,582 + +0.3
688,593 + +1.2
688,594 - +1.1
688,597 - -1.3
688,610 + -0.3
688,627 + +0.6
688,645 + +0.5
688,645 + +0.9
688,662 - +2.0
688,687 - -0.7
688,776 - -0.2
688,781 + -0.2
689,121 + 11023 mRNA_2655 0.22 -1.4

Or see this region's nucleotide sequence