Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2675

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2675: 11043 - HMMPfam-Putative adipose-regulatory protein (Seipin)-PF06775, at 743,974 to 745,972 11043

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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743,026 + +1.7
743,045 - -0.8
743,048 + -1.1
743,067 + +0.2
743,223 + +1.5
743,317 - -0.7
743,354 + +1.0
743,365 - +2.4
743,762 - -0.5
743,762 - +0.9
743,798 + +0.4
743,798 - +0.0
743,806 - -0.3
743,840 + -1.1
743,846 + +0.5
743,950 - +2.5
744,125 - +1.2
744,206 - 11043 mRNA_2675 0.12 +1.2
744,231 - 11043 mRNA_2675 0.13 -0.7
744,231 - 11043 mRNA_2675 0.13 -0.9
744,247 - 11043 mRNA_2675 0.14 -0.2
744,256 + 11043 mRNA_2675 0.14 +0.5
744,280 - 11043 mRNA_2675 0.15 +2.0
744,362 + 11043 mRNA_2675 0.19 +2.1
744,365 + 11043 mRNA_2675 0.20 +1.5
744,390 + 11043 mRNA_2675 0.21 +1.6
744,555 - 11043 mRNA_2675 0.29 +2.4
744,587 + 11043 mRNA_2675 0.31 +1.5
744,676 + 11043 mRNA_2675 0.35 -0.6
745,117 + 11043 mRNA_2675 0.57 -0.9
745,492 - 11043 mRNA_2675 0.76 +0.8
745,696 - 11043 mRNA_2675 0.86 +0.3
745,952 - -1.0
745,954 - +1.8
745,954 - +1.5
745,963 + -0.6
746,095 + -1.4
746,104 + -0.0
746,110 - +1.0
746,124 + +0.5
746,151 + +3.2
746,167 + +0.3
746,170 - -0.2
746,248 - +1.0
746,257 + +0.1
746,264 + +0.3
746,276 + +0.1
746,276 - +0.3
746,277 + +0.1
746,278 - -1.1
746,288 - +0.9
746,314 + +0.8

Or see this region's nucleotide sequence