Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2811

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11178 and 11179 are separated by 121 nucleotides11179 and 11180 are separated by 682 nucleotides mRNA_2810: 11178 - K00026 MDH2 malate dehydrogenase, at 278,707 to 280,370 11178 mRNA_2811: 11179 - Hypothetical Protein, at 280,492 to 281,442 11179 mRNA_2812: 11180 - Hypothetical Protein, at 282,125 to 283,432 11180

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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280,393 - -0.2
280,434 - -0.0
280,480 - +0.6
281,084 + 11179 mRNA_2811 0.62 -0.9
281,340 - 11179 mRNA_2811 0.89 -1.5
281,358 + -2.6
281,798 + +1.7
281,948 + +0.5
282,219 + +1.1
282,243 - -0.1
282,354 - 11180 mRNA_2812 0.18 +0.3

Or see this region's nucleotide sequence