Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2817

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11184 and 11185 are separated by 293 nucleotides11185 and 11186 are separated by 685 nucleotides mRNA_2816: 11184 - HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SMART-Domain in histone families 1 and 5-SM00526,SUPERFAMILY--SSF46785, at 289,258 to 289,809 11184 mRNA_2817: 11185 - KOG2946 Uncharacterized conserved protein, at 290,103 to 291,394 11185 mRNA_2818: 11186 - K02178 BUB1 checkpoint serine/threonine-protein kinase, at 292,080 to 296,876 11186

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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289,108 - +0.1
289,182 - -0.7
289,297 + -0.7
289,468 - 11184 mRNA_2816 0.38 -0.4
289,475 - 11184 mRNA_2816 0.39 +1.5
289,478 - 11184 mRNA_2816 0.40 -0.3
289,571 - 11184 mRNA_2816 0.57 +2.3
290,294 + 11185 mRNA_2817 0.15 +1.1
290,324 + 11185 mRNA_2817 0.17 -0.9
291,031 + 11185 mRNA_2817 0.72 +0.5
291,290 + -0.1
291,318 + -0.1
291,342 - -0.2
291,457 - +0.8
291,594 + -1.6
291,610 + +0.5
291,612 - +1.6
291,613 + +0.2
291,888 - +0.9
291,888 - +1.2

Or see this region's nucleotide sequence