Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2824

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11191 and 11192 are separated by 104 nucleotides mRNA_2823: 11191 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 303,480 to 304,770 11191 mRNA_2824: 11192 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 304,875 to 305,755 11192

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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303,939 - 11191 mRNA_2823 0.36 -0.4
303,945 + 11191 mRNA_2823 0.36 -0.8
303,952 - 11191 mRNA_2823 0.37 +1.7
303,962 + 11191 mRNA_2823 0.37 -2.2
303,964 + 11191 mRNA_2823 0.37 -0.7
304,045 - 11191 mRNA_2823 0.44 -1.2
304,090 + 11191 mRNA_2823 0.47 +3.1
304,091 - 11191 mRNA_2823 0.47 -0.7
304,118 - 11191 mRNA_2823 0.49 -0.9
304,131 + 11191 mRNA_2823 0.50 -1.9
304,134 - 11191 mRNA_2823 0.51 -1.4
304,237 - 11191 mRNA_2823 0.59 -1.4
304,294 - 11191 mRNA_2823 0.63 -0.4
304,294 - 11191 mRNA_2823 0.63 -0.1
304,300 + 11191 mRNA_2823 0.64 +2.3
304,300 + 11191 mRNA_2823 0.64 -0.6
304,321 - 11191 mRNA_2823 0.65 -0.6
304,386 - 11191 mRNA_2823 0.70 -1.4
304,400 + 11191 mRNA_2823 0.71 +0.4
304,485 - 11191 mRNA_2823 0.78 +0.3
304,526 - 11191 mRNA_2823 0.81 -0.8
304,555 + 11191 mRNA_2823 0.83 -0.6
304,582 + 11191 mRNA_2823 0.85 -0.2
304,832 + -0.7
304,832 + -0.1
305,177 - 11192 mRNA_2824 0.34 -1.6
305,269 - 11192 mRNA_2824 0.45 +0.7
305,467 - 11192 mRNA_2824 0.67 -1.0
305,590 + 11192 mRNA_2824 0.81 -0.3
305,739 - +0.2
306,149 + +0.1
306,422 - -0.2
306,435 + +0.1
306,453 - -0.1
306,459 - -2.0
306,464 + -0.8
306,472 + -1.8
306,602 - -1.0
306,616 - +1.0
306,617 - +1.3
306,620 + +1.9
306,633 - +1.3
306,678 + +0.1
306,683 + +1.6
306,686 - +0.2
306,726 - -0.3
306,750 + -0.1

Or see this region's nucleotide sequence