Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2860

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11227 and 11228 are separated by 332 nucleotides11228 and 11229 are separated by 316 nucleotides mRNA_2859: 11227 - Hypothetical Protein, at 385,402 to 386,720 11227 mRNA_2860: 11228 - K11811 arsH arsenical resistance protein ArsH, at 387,053 to 388,029 11228 mRNA_2861: 11229 - KOG4754 Predicted phosphoglycerate mutase, at 388,346 to 389,336 11229

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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386,198 + 11227 mRNA_2859 0.60 -0.7
386,476 - 11227 mRNA_2859 0.81 +0.2
386,606 + -0.3
386,710 - -0.3
386,731 + -0.2
386,760 - -0.1
386,761 - +2.2
386,766 + +0.6
386,768 - +0.6
386,771 - -1.2
386,775 - +0.1
386,776 + +1.1
386,791 - -0.3
386,793 + +1.7
386,793 + +1.9
386,794 + -0.5
386,795 - -0.1
386,815 + +1.7
386,816 + -0.1
386,834 + +0.0
386,846 + -2.8
386,850 + -1.4
386,861 + +0.1
386,875 + -0.9
386,975 + +0.8
386,992 - +0.1
387,132 + +0.8
387,436 + 11228 mRNA_2860 0.39 -0.1
387,721 + 11228 mRNA_2860 0.68 +0.6
388,269 - +1.1
388,318 + +1.3
388,346 + -0.1
388,428 - +1.3
388,445 - 11229 mRNA_2861 0.10 +1.3

Or see this region's nucleotide sequence