Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2922

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11290 and 11291 are separated by 276 nucleotides mRNA_2922: 11290 - K10807 RRM1 ribonucleoside-diphosphate reductase subunit M1, at 564,601 to 568,377 11290 mRNA_2923: 11291 - Hypothetical Protein, at 568,654 to 569,537 11291

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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563,686 - -1.1
563,709 - -0.5
564,002 - +1.1
564,126 + +2.8
564,301 + +0.5
564,315 - +0.2
564,316 + +2.0
564,329 - +1.2
564,367 + -1.7
564,373 - -0.2
564,379 + +1.7
564,379 + +2.1
564,391 + +0.3
564,406 + +0.1
564,418 + -0.8
564,442 + +2.4
564,447 + +0.0
564,449 - +0.8
564,454 + -0.2
564,459 + -1.7
564,460 - +0.1
564,466 + +1.0
564,468 + -0.8
564,472 - +0.6
564,479 - +0.1
564,481 + +2.0
564,497 + +0.2
568,419 + -0.3
568,749 + 11291 mRNA_2923 0.11 -1.4
568,772 + 11291 mRNA_2923 0.13 -0.0
568,783 + 11291 mRNA_2923 0.15 -1.0
568,890 - 11291 mRNA_2923 0.27 -0.6
569,048 + 11291 mRNA_2923 0.45 +1.8

Or see this region's nucleotide sequence