Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2972

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11339 and 11340 are separated by 269 nucleotides11340 and 11341 are separated by 44 nucleotides mRNA_2971: 11339 - HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448, at 684,112 to 685,866 11339 mRNA_2972: 11340 - K03850 ALG10 alpha-1,2-glucosyltransferase, at 686,136 to 688,131 11340 mRNA_2973: 11341 - K11996 MOCS3, UBA4 adenylyltransferase and sulfurtransferase, at 688,176 to 690,178 11341

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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685,174 - 11339 mRNA_2971 0.61 +1.2
685,357 - 11339 mRNA_2971 0.71 +0.8
685,368 + 11339 mRNA_2971 0.72 -0.8
685,374 - 11339 mRNA_2971 0.72 +1.2
685,392 + 11339 mRNA_2971 0.73 +0.8
685,496 - 11339 mRNA_2971 0.79 +0.8
685,536 + 11339 mRNA_2971 0.81 +0.3
685,597 + 11339 mRNA_2971 0.85 -0.7
685,598 + 11339 mRNA_2971 0.85 -0.7
685,599 - 11339 mRNA_2971 0.85 +0.4
685,601 - 11339 mRNA_2971 0.85 +0.8
685,601 - 11339 mRNA_2971 0.85 +0.2
685,641 - 11339 mRNA_2971 0.87 +0.4
685,687 - 11339 mRNA_2971 0.90 -1.6
685,688 - 11339 mRNA_2971 0.90 +0.5
685,697 - -0.9
685,756 - +0.4
685,778 + -0.4
685,785 + +0.4
685,801 - -0.3
685,812 + -1.9
685,854 + +2.4
685,905 - +1.0
685,958 + -0.5
685,967 + +0.2
685,974 - +0.4
686,118 - +0.2
686,119 - +0.3
686,164 + +1.2
686,164 + +1.1
686,218 - +0.2
686,221 - -1.0
686,281 - -1.2
686,286 + +0.4
686,460 + 11340 mRNA_2972 0.16 +1.3
686,503 - 11340 mRNA_2972 0.18 -0.4
686,542 + 11340 mRNA_2972 0.20 +2.4
686,744 - 11340 mRNA_2972 0.30 -1.8
686,903 + 11340 mRNA_2972 0.38 -0.6
686,951 - 11340 mRNA_2972 0.41 -0.9
687,136 + 11340 mRNA_2972 0.50 +1.3
687,152 + 11340 mRNA_2972 0.51 -0.4
687,175 + 11340 mRNA_2972 0.52 +1.8
687,175 + 11340 mRNA_2972 0.52 -0.0
687,292 + 11340 mRNA_2972 0.58 -0.1
687,292 + 11340 mRNA_2972 0.58 +1.1
687,292 + 11340 mRNA_2972 0.58 +0.5
687,304 + 11340 mRNA_2972 0.59 -0.2
687,325 + 11340 mRNA_2972 0.60 -0.7
687,328 - 11340 mRNA_2972 0.60 -1.1
687,329 + 11340 mRNA_2972 0.60 +1.0
687,408 + 11340 mRNA_2972 0.64 -0.8
687,411 + 11340 mRNA_2972 0.64 -1.8
687,577 - 11340 mRNA_2972 0.72 -0.1
687,577 - 11340 mRNA_2972 0.72 +0.6
687,594 + 11340 mRNA_2972 0.73 -3.4
687,595 - 11340 mRNA_2972 0.73 +2.2
687,599 - 11340 mRNA_2972 0.73 -0.2
687,607 - 11340 mRNA_2972 0.74 -0.1
687,708 - 11340 mRNA_2972 0.79 +1.2
687,763 - 11340 mRNA_2972 0.82 -1.2
687,763 - 11340 mRNA_2972 0.82 -0.6
687,766 + 11340 mRNA_2972 0.82 +3.3
688,004 - +0.6
688,004 - +1.1
688,018 - +0.0
688,031 + +0.5
688,165 + +1.3
688,288 - +0.2
688,289 - +0.2
688,496 + 11341 mRNA_2973 0.16 +0.7
688,575 - 11341 mRNA_2973 0.20 -1.3
688,585 + 11341 mRNA_2973 0.20 -0.7
688,756 - 11341 mRNA_2973 0.29 +1.2
688,901 + 11341 mRNA_2973 0.36 +1.3
689,008 - 11341 mRNA_2973 0.42 +0.8

Or see this region's nucleotide sequence