Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2994

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11361 and 11362 are separated by 124 nucleotides11362 and 11363 are separated by 254 nucleotides mRNA_2993: 11361 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 29,624 to 29,993 11361 mRNA_2994: 11362 - K14729 FOX2 multifunctional beta-oxidation protein, at 30,118 to 34,295 11362 mRNA_2995: 11363 - K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3, at 34,550 to 37,704 11363

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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29,212 + +0.2
29,317 + +0.1
29,361 - -0.5
29,390 - +0.1
29,393 + -0.3
29,449 + +1.2
29,479 - -1.0
29,490 + +0.6
29,556 - +1.6
29,690 - 11361 mRNA_2993 0.18 -0.2
29,693 - 11361 mRNA_2993 0.19 +0.8
29,694 - 11361 mRNA_2993 0.19 -0.6
29,802 + 11361 mRNA_2993 0.48 -1.1
29,967 + +0.9
29,999 + -0.2
30,170 - +0.2
30,250 + -1.4
30,385 + -2.2
30,462 + +0.6
30,476 - -0.0
30,478 + -0.8
30,491 + +1.1
30,494 - +0.5
30,499 - -1.0
30,625 - 11362 mRNA_2994 0.12 -0.4
30,712 + 11362 mRNA_2994 0.14 -0.2
30,839 + 11362 mRNA_2994 0.17 -0.8
30,858 + 11362 mRNA_2994 0.18 +1.1
30,956 - 11362 mRNA_2994 0.20 -0.2
31,074 - 11362 mRNA_2994 0.23 -0.3
31,080 + 11362 mRNA_2994 0.23 -0.7
31,080 + 11362 mRNA_2994 0.23 +0.2
31,080 + 11362 mRNA_2994 0.23 +0.3
31,467 + 11362 mRNA_2994 0.32 -2.3
31,564 + 11362 mRNA_2994 0.35 +1.8
31,572 + 11362 mRNA_2994 0.35 +0.1
31,580 + 11362 mRNA_2994 0.35 -0.5
31,580 + 11362 mRNA_2994 0.35 +1.3
31,655 + 11362 mRNA_2994 0.37 -0.2
31,873 + 11362 mRNA_2994 0.42 +1.3
31,874 - 11362 mRNA_2994 0.42 -0.9
32,169 - 11362 mRNA_2994 0.49 -0.3
32,169 - 11362 mRNA_2994 0.49 +1.5
32,314 - 11362 mRNA_2994 0.53 +1.1
32,331 + 11362 mRNA_2994 0.53 -0.5
32,432 - 11362 mRNA_2994 0.55 -0.3
32,596 - 11362 mRNA_2994 0.59 -1.4
32,599 + 11362 mRNA_2994 0.59 -0.6
32,601 - 11362 mRNA_2994 0.59 +1.5
32,610 + 11362 mRNA_2994 0.60 -0.2
32,610 + 11362 mRNA_2994 0.60 +0.1
32,727 + 11362 mRNA_2994 0.62 +0.4
32,873 - 11362 mRNA_2994 0.66 +0.6
32,912 + 11362 mRNA_2994 0.67 -0.5
32,985 + 11362 mRNA_2994 0.69 -1.3
33,149 + 11362 mRNA_2994 0.73 +1.5
33,237 - 11362 mRNA_2994 0.75 -0.3
33,294 - 11362 mRNA_2994 0.76 +0.1
33,306 + 11362 mRNA_2994 0.76 +1.6
33,337 + 11362 mRNA_2994 0.77 +0.4
33,361 - 11362 mRNA_2994 0.78 -0.7
33,418 + 11362 mRNA_2994 0.79 +2.7
33,421 - 11362 mRNA_2994 0.79 -0.7
33,504 - 11362 mRNA_2994 0.81 +0.6
33,554 + 11362 mRNA_2994 0.82 +0.3
33,814 + 11362 mRNA_2994 0.88 +0.5
33,902 - -0.0
34,049 - +0.9
34,167 - -0.1
34,189 + -1.5
34,208 + -1.2
34,212 - -1.2
34,217 + +0.6
34,220 + -0.6
34,352 + -1.4
34,355 - +0.2
34,358 + +3.0
34,364 - +2.2
34,371 - +1.3
34,377 + -0.4
34,384 + +0.8
34,387 - -0.1
34,402 + +0.0
34,408 - -0.9
34,421 + +0.4
34,431 + +0.1
34,648 + +0.9
34,697 + +0.6
34,697 + +0.2
35,117 - 11363 mRNA_2995 0.18 +0.3
35,245 - 11363 mRNA_2995 0.22 +0.1
35,247 - 11363 mRNA_2995 0.22 -1.7

Or see this region's nucleotide sequence