Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3004

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11371 and 11372 are separated by 166 nucleotides11372 and 11373 are separated by 630 nucleotides mRNA_3003: 11371 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 50,625 to 53,414 11371 mRNA_3004: 11372 - K12624 LSM5 U6 snRNA-associated Sm-like protein LSm5, at 53,581 to 54,123 11372 mRNA_3005: 11373 - K19708 PTC6, AUP1 protein phosphatase PTC6, at 54,754 to 56,074 11373

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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52,743 + 11371 mRNA_3003 0.76 +1.4
53,186 - -2.2
53,353 - -1.7
53,484 - +1.5
53,585 - -0.0
54,193 - +0.9
54,311 + -0.5
54,369 - +0.1
54,514 + +0.2
54,655 + +0.2
54,855 + -0.7
55,088 + 11373 mRNA_3005 0.25 -0.2

Or see this region's nucleotide sequence