Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3058

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11425 and 11426 are separated by 300 nucleotides mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212,271 to 214,660 11425 mRNA_3058: 11426 - Hypothetical Protein, at 214,961 to 216,563 11426

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
213,989 - 11425 mRNA_3057 0.72 -0.0
213,994 + 11425 mRNA_3057 0.72 +0.2
214,072 + 11425 mRNA_3057 0.75 +2.3
214,224 - 11425 mRNA_3057 0.82 +0.1
214,238 - 11425 mRNA_3057 0.82 -1.0
214,243 + 11425 mRNA_3057 0.83 +0.1
214,523 + +0.4
214,665 + -0.4
214,696 + +0.4
214,932 + -0.5
214,987 + +0.8
214,988 + -0.4
215,019 + +0.2
215,262 - 11426 mRNA_3058 0.19 +0.5
215,363 - 11426 mRNA_3058 0.25 +0.3
215,509 + 11426 mRNA_3058 0.34 +1.0
215,589 - 11426 mRNA_3058 0.39 +2.1
215,589 - 11426 mRNA_3058 0.39 -0.2
215,589 - 11426 mRNA_3058 0.39 +1.6
215,589 - 11426 mRNA_3058 0.39 -0.6
215,595 + 11426 mRNA_3058 0.40 +0.4
215,643 + 11426 mRNA_3058 0.43 -0.2
215,766 + 11426 mRNA_3058 0.50 +0.4
215,766 - 11426 mRNA_3058 0.50 +0.1
215,839 - 11426 mRNA_3058 0.55 +1.0
215,842 - 11426 mRNA_3058 0.55 +1.2
215,866 + 11426 mRNA_3058 0.56 +0.1
215,905 - 11426 mRNA_3058 0.59 -1.3
216,117 + 11426 mRNA_3058 0.72 +0.3
216,133 - 11426 mRNA_3058 0.73 -0.5
216,179 - 11426 mRNA_3058 0.76 +0.7
216,189 - 11426 mRNA_3058 0.77 +0.1
216,191 - 11426 mRNA_3058 0.77 +0.4
216,234 - 11426 mRNA_3058 0.79 -0.6
216,271 - 11426 mRNA_3058 0.82 +0.5
216,345 - 11426 mRNA_3058 0.86 -1.8
216,395 - 11426 mRNA_3058 0.89 +2.4
216,443 + +1.2
216,446 - +0.2
216,449 + -0.8
216,569 + -0.6
216,570 + -1.1
216,674 + -2.2
216,742 + -0.0
216,837 - +1.5
216,865 - +0.2
216,868 - +0.1
216,879 + -0.1
216,882 + +0.4
216,884 - -0.2
217,004 + -1.0
217,009 - -1.9
217,011 - +0.3
217,029 - -0.1
217,032 + +3.2
217,035 - -0.9
217,037 + +0.4
217,038 + +2.2
217,045 - +2.2
217,152 - +1.4
217,173 + +0.2
217,193 + -1.8
217,252 - -0.3
217,317 + -2.5
217,461 - -0.4
217,464 + +0.2
217,470 - +1.7
217,470 - +0.7
217,475 + +0.7

Or see this region's nucleotide sequence