Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3059

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11427 and 11428 are separated by 499 nucleotides mRNA_3059: 11427 - Hypothetical Protein, at 217,589 to 219,191 11427 mRNA_3060: 11428 - K13115 CCDC130 coiled-coil domain-containing protein 130, at 219,691 to 221,317 11428

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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216,674 + -2.2
216,742 + -0.0
216,837 - +1.5
216,865 - +0.2
216,868 - +0.1
216,879 + -0.1
216,882 + +0.4
216,884 - -0.2
217,004 + -1.0
217,009 - -1.9
217,011 - +0.3
217,029 - -0.1
217,032 + +3.2
217,035 - -0.9
217,037 + +0.4
217,038 + +2.2
217,045 - +2.2
217,152 - +1.4
217,173 + +0.2
217,193 + -1.8
217,252 - -0.3
217,317 + -2.5
217,461 - -0.4
217,464 + +0.2
217,470 - +1.7
217,470 - +0.7
217,475 + +0.7
217,636 + +0.7
217,909 + 11427 mRNA_3059 0.20 -0.9
217,927 - 11427 mRNA_3059 0.21 -0.0
218,062 + 11427 mRNA_3059 0.30 -0.7
218,066 + 11427 mRNA_3059 0.30 +0.4
218,147 - 11427 mRNA_3059 0.35 -1.2
218,168 + 11427 mRNA_3059 0.36 +0.5
218,203 - 11427 mRNA_3059 0.38 -0.7
218,447 - 11427 mRNA_3059 0.54 +0.1
218,618 + 11427 mRNA_3059 0.64 +0.7
218,635 - 11427 mRNA_3059 0.65 -0.8
218,649 + 11427 mRNA_3059 0.66 +2.4
218,747 + 11427 mRNA_3059 0.72 -2.7
218,798 - 11427 mRNA_3059 0.75 +0.6
218,892 - 11427 mRNA_3059 0.81 +0.1
218,996 + 11427 mRNA_3059 0.88 -0.0
219,037 + -0.0
219,182 - -0.5
219,183 - +0.1
219,309 - +0.8
219,330 - +1.4
219,331 - -0.1
219,346 - -0.5
219,346 - -1.5
219,347 + +0.6
219,451 - +0.3
219,453 + +0.1
219,467 - +1.5
219,484 - -0.4
219,501 - -0.6
219,513 + +0.4
219,624 - -0.2
219,630 + -0.0
219,630 + +0.9
219,637 + +1.4
219,639 + -0.1
219,753 - +0.1
219,759 - -0.8
219,763 + +0.0
219,765 - +0.5
219,768 - -0.1
219,773 + +0.5
219,780 - +2.1
219,902 - 11428 mRNA_3060 0.13 -0.3
219,902 - 11428 mRNA_3060 0.13 -0.2
219,903 + 11428 mRNA_3060 0.13 +0.8
219,908 + 11428 mRNA_3060 0.13 -0.7
219,931 + 11428 mRNA_3060 0.15 -0.1
220,038 - 11428 mRNA_3060 0.21 +0.1
220,082 + 11428 mRNA_3060 0.24 +1.6

Or see this region's nucleotide sequence