Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3070

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11437 and 11438 are separated by 234 nucleotides mRNA_3069: 11437 - KOG2505 Ankyrin repeat protein, at 239,616 to 241,978 11437 mRNA_3070: 11438 - Hypothetical Protein, at 242,213 to 243,874 11438

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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241,480 + 11437 mRNA_3069 0.79 +1.3
241,489 - 11437 mRNA_3069 0.79 +1.2
241,624 - 11437 mRNA_3069 0.85 -0.6
241,884 - +1.1
241,901 + +3.1
242,051 + +2.0
242,545 + 11438 mRNA_3070 0.20 +0.6
242,644 + 11438 mRNA_3070 0.26 +0.4
242,662 - 11438 mRNA_3070 0.27 +0.6
242,963 - 11438 mRNA_3070 0.45 +3.2
243,067 + 11438 mRNA_3070 0.51 +0.3
243,076 + 11438 mRNA_3070 0.52 +1.1
243,356 - 11438 mRNA_3070 0.69 +0.5
243,638 + 11438 mRNA_3070 0.86 +0.5
243,642 - 11438 mRNA_3070 0.86 -0.9
243,645 - 11438 mRNA_3070 0.86 +0.6
243,659 + 11438 mRNA_3070 0.87 -0.9
243,676 + 11438 mRNA_3070 0.88 -0.3
243,681 - 11438 mRNA_3070 0.88 +0.4
243,795 - +0.2
243,798 - +1.4
243,813 - +2.6
243,817 + +0.5
243,835 + +0.3
243,864 + +0.3
243,949 - -1.1
244,060 + +1.8
244,104 - -0.7
244,124 + +0.1
244,132 - -1.7
244,133 - +0.5
244,154 + -1.4
244,162 + -0.5
244,235 + -2.6
244,251 + -0.1
244,255 + +0.3
244,256 - -0.7
244,257 - +1.0
244,260 + -0.1
244,262 + -0.5
244,263 - +1.3
244,266 + -1.8
244,272 - -0.2
244,274 - -1.6
244,274 + -0.5
244,277 + -0.9
244,278 + -1.2
244,281 - -0.2
244,282 + -1.2
244,283 - +0.8
244,286 + +0.7
244,290 + -0.1
244,290 - +1.6
244,292 + +0.3
244,292 + -0.3
244,300 + -0.0
244,331 + +0.5
244,393 + +0.6
244,438 + +0.3
244,440 - +0.2
244,721 - +0.2
244,732 - -0.9
244,839 - +0.0
244,865 + -1.5

Or see this region's nucleotide sequence