Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3077

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11444 and 11445 are separated by 29 nucleotides11445 and 11446 are separated by 175 nucleotides mRNA_3076: 11444 - KOG4497 Uncharacterized conserved protein WDR8, contains WD repeats, at 261,811 to 264,179 11444 mRNA_3077: 11445 - K07542 PIGV phosphatidylinositol glycan, class V, at 264,209 to 265,729 11445 mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265,905 to 270,528 11446

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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263,261 - 11444 mRNA_3076 0.61 -0.5
263,337 + 11444 mRNA_3076 0.64 +1.6
263,497 + 11444 mRNA_3076 0.71 -1.8
263,640 - 11444 mRNA_3076 0.77 -0.4
263,682 - 11444 mRNA_3076 0.79 +0.5
263,685 + 11444 mRNA_3076 0.79 +0.9
263,846 - 11444 mRNA_3076 0.86 -2.7
264,076 - -0.4
264,076 - +0.3
264,110 + +1.8
264,131 + +0.9
264,256 + -0.0
264,278 + +0.4
264,278 + -2.5
264,282 + -2.0
264,369 - 11445 mRNA_3077 0.11 -0.7
264,402 + 11445 mRNA_3077 0.13 +0.2
264,706 - 11445 mRNA_3077 0.33 -1.3
264,758 - 11445 mRNA_3077 0.36 +1.4
264,817 - 11445 mRNA_3077 0.40 +1.4
264,867 - 11445 mRNA_3077 0.43 -2.1
264,868 + 11445 mRNA_3077 0.43 +0.1
264,880 + 11445 mRNA_3077 0.44 +1.3
264,914 - 11445 mRNA_3077 0.46 -0.1
265,060 - 11445 mRNA_3077 0.56 +2.1
265,094 + 11445 mRNA_3077 0.58 +0.8
265,114 + 11445 mRNA_3077 0.60 -0.3
265,122 + 11445 mRNA_3077 0.60 -2.5
265,137 - 11445 mRNA_3077 0.61 +1.1
265,148 - 11445 mRNA_3077 0.62 +1.5
265,153 + 11445 mRNA_3077 0.62 +2.7
265,160 - 11445 mRNA_3077 0.63 -0.9
265,180 - 11445 mRNA_3077 0.64 +0.3
265,258 + 11445 mRNA_3077 0.69 +2.3
265,296 + 11445 mRNA_3077 0.71 -0.1
265,340 - 11445 mRNA_3077 0.74 -0.9
265,415 - 11445 mRNA_3077 0.79 -0.2
265,426 - 11445 mRNA_3077 0.80 +0.7
265,433 - 11445 mRNA_3077 0.80 -0.8
265,437 - 11445 mRNA_3077 0.81 +0.2
265,437 - 11445 mRNA_3077 0.81 -0.1
265,447 + 11445 mRNA_3077 0.81 +1.0
265,545 - 11445 mRNA_3077 0.88 +0.9
265,602 + -1.0
265,605 + -1.6
265,611 + +0.1
265,625 - +0.3
265,724 + +0.4
265,731 - -0.8
265,738 - -0.1
265,740 - +1.6
265,748 - +1.3
265,758 - +0.2
265,890 - +1.0
265,905 + -0.4
265,915 - +0.2
266,184 + -1.2
266,494 - 11446 mRNA_3078 0.13 +3.7
266,538 + 11446 mRNA_3078 0.14 -1.1
266,610 + 11446 mRNA_3078 0.15 +0.9
266,642 - 11446 mRNA_3078 0.16 -0.1

Or see this region's nucleotide sequence