Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3132

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11499 and 11500 are separated by 160 nucleotides11500 and 11501 are separated by 168 nucleotides mRNA_3131: 11499 - KOG1230 Protein containing repeated kelch motifs, at 391,641 to 394,728 11499 mRNA_3132: 11500 - Hypothetical Protein, at 394,889 to 395,179 11500 mRNA_3133: 11501 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 395,348 to 397,742 11501

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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393,920 + 11499 mRNA_3131 0.74 -0.5
394,198 - 11499 mRNA_3131 0.83 +1.8
394,321 - 11499 mRNA_3131 0.87 +0.4
394,367 + 11499 mRNA_3131 0.88 -1.6
394,489 - +0.7
394,497 - -0.6
394,510 + -1.0
394,517 - -0.0
394,644 - +0.1
394,801 + -0.8
394,805 - +0.7
394,810 - +1.6
394,824 + -0.6
394,869 - +0.4
394,938 + 11500 mRNA_3132 0.17 +0.4
394,993 - 11500 mRNA_3132 0.36 -1.9
395,031 - 11500 mRNA_3132 0.49 +1.8
395,225 - +1.9
395,255 + -2.0
395,379 - +0.0
395,508 + +0.1
395,515 - +0.3
395,643 + 11501 mRNA_3133 0.12 +1.3
395,683 + 11501 mRNA_3133 0.14 -0.1
395,705 + 11501 mRNA_3133 0.15 -0.5
395,820 + 11501 mRNA_3133 0.20 +0.2
395,832 - 11501 mRNA_3133 0.20 -0.1
395,860 - 11501 mRNA_3133 0.21 -1.1
395,919 - 11501 mRNA_3133 0.24 +1.9
395,967 - 11501 mRNA_3133 0.26 -0.0
396,015 + 11501 mRNA_3133 0.28 +0.1
396,092 - 11501 mRNA_3133 0.31 -0.2

Or see this region's nucleotide sequence