Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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12 + +0.4
12 + -0.5
15 + +0.8
16 + +1.1
18 + +0.5
22 + -0.6
25 + +1.5
57 - -1.1
61 - +0.8
62 + -0.4
62 + +0.8
66 + -0.4
72 + +0.2
72 + +0.2
72 + -0.2
75 + +1.3
78 - -0.1
105 + +0.1
110 - -1.8
114 + -0.1
115 + -1.2
118 + +1.1
122 + -1.0
122 - +0.4
124 + +0.0
135 + -0.1
147 + +0.9
157 + +0.9
161 + +0.4
168 + -1.5
174 + -0.9
177 - -1.8
228 + -0.7
247 + +0.8
252 - -2.3
253 - +1.0
255 + -2.1
258 + -0.2
264 - +0.7
269 + -0.2
269 - +0.5
274 + -1.1
275 - +0.1
277 + -1.1
280 + -1.8
280 + -0.2
283 - -0.3
285 - -0.0
287 + -0.1
287 + +0.6
288 + +0.1
292 - -0.8
293 + +2.1
298 + -0.8
305 - +0.9
314 + -0.3
320 + -0.6
368 + +0.1
370 - -0.7
372 + +0.7
382 + -0.7
384 + -0.2
391 + +0.3
391 - -2.1
397 + +1.7
397 - -1.4
402 + +1.8
405 + +1.0
423 - -0.7
430 + +2.2
440 + +0.6
446 + +0.1
470 + -0.3
524 + -1.4
532 + -1.3
545 - +2.0
557 + +0.3
569 + -0.3
570 - +0.9
583 + -0.5
584 + +1.0
603 - +0.3
603 + +0.4
634 - 11537 mRNA_3169 0.11 +0.4
636 + 11537 mRNA_3169 0.11 +0.7
646 + 11537 mRNA_3169 0.12 +0.7
661 + 11537 mRNA_3169 0.13 -0.1
667 + 11537 mRNA_3169 0.14 -0.2
698 + 11537 mRNA_3169 0.17 -0.6
704 - 11537 mRNA_3169 0.18 -0.2
705 - 11537 mRNA_3169 0.18 +1.6
721 - 11537 mRNA_3169 0.19 -0.9
725 + 11537 mRNA_3169 0.20 -1.1
738 - 11537 mRNA_3169 0.21 +0.5
849 + 11537 mRNA_3169 0.32 -0.4
871 + 11537 mRNA_3169 0.34 +0.9
883 + 11537 mRNA_3169 0.35 +2.0
894 + 11537 mRNA_3169 0.37 -1.3
895 + 11537 mRNA_3169 0.37 -0.4
922 + 11537 mRNA_3169 0.39 +0.6
965 - 11537 mRNA_3169 0.44 -0.3
1,012 - 11537 mRNA_3169 0.48 -0.1
1,026 + 11537 mRNA_3169 0.50 -0.4
1,026 + 11537 mRNA_3169 0.50 -0.8
1,105 + 11537 mRNA_3169 0.58 -0.8
1,123 + 11537 mRNA_3169 0.60 -0.0
1,141 + 11537 mRNA_3169 0.61 +0.3
1,142 + 11537 mRNA_3169 0.61 +0.7
1,165 + 11537 mRNA_3169 0.64 -0.4
1,174 - 11537 mRNA_3169 0.65 -1.0
1,174 + 11537 mRNA_3169 0.65 +1.7
1,259 + 11537 mRNA_3169 0.73 +2.4
1,265 + 11537 mRNA_3169 0.74 +0.4
1,268 + 11537 mRNA_3169 0.74 -0.1
1,269 - 11537 mRNA_3169 0.74 -0.6
1,288 - 11537 mRNA_3169 0.76 -0.2
1,297 + 11537 mRNA_3169 0.77 -2.3
1,303 - 11537 mRNA_3169 0.78 +0.1
1,399 + 11537 mRNA_3169 0.87 +0.1
1,412 - 11537 mRNA_3169 0.88 -1.6
1,419 - 11537 mRNA_3169 0.89 +0.1
1,423 - 11537 mRNA_3169 0.90 -2.1
1,429 - +0.6
1,453 + +0.0
1,459 + +0.5
1,459 + -0.7
1,460 - -1.0
1,461 + -1.4
1,462 + +0.6
1,467 + +0.8
1,470 - -0.7
1,474 - -0.5
1,485 + +0.9
1,520 + -0.8
1,523 + +1.0
1,531 - +1.3
1,537 + -0.4
1,541 + +1.6
1,562 + +1.1
1,567 + +0.8
1,572 + -0.3
1,582 - -0.6
1,584 - +0.5
1,589 + -1.2
1,596 - -0.3
1,601 - -0.2
1,602 + -0.7
1,605 + -0.1
1,609 + +0.7
1,616 + -2.0
1,636 + +1.1
1,654 + +1.4
1,656 - +1.5
1,666 + +0.4
1,675 - +0.0
1,682 - +2.7
1,697 - -0.3
1,709 + -0.3
1,709 - -0.3
1,711 + +0.3
1,718 - -0.3
1,719 + -0.6
1,722 - -0.4
1,723 + +0.0
1,725 - +0.0
1,725 - -0.2
1,727 + +0.1
1,730 + -0.5
1,731 + +0.1
1,732 + +1.8
1,732 + +0.4
1,734 + -2.7
1,734 + -1.2
1,734 + -0.3
1,739 - -0.1
1,740 + +1.2
1,744 - -1.3
1,747 + -0.9
1,749 + -0.8
1,759 + -0.5
1,759 + +0.0
1,759 + +1.4
1,761 + +1.3
1,763 + -1.0
1,765 + -0.7
1,767 + +1.7
1,769 + -0.8
1,772 + +0.7
1,772 + -1.0
1,774 + -1.3
1,774 + -0.5
1,775 + -2.0
1,776 - +0.5
1,776 + -0.6
1,777 + +0.7
1,778 + +1.2
1,778 - +0.6
1,781 - +1.0
1,783 - +1.0
1,783 - +0.7
1,783 - -0.1
1,783 - -0.6
1,784 + +1.1
1,789 + +1.3
1,789 - -0.1
1,791 + +0.3
1,792 + -0.5
1,793 + +1.8
1,795 + -0.9
1,796 + +0.1
1,796 - -0.3
1,798 + -0.9
1,800 + -0.2
1,801 + +0.2
1,805 + +0.1
1,805 + -1.1
1,807 + +0.5
1,813 - -0.1
1,814 + +0.1
1,814 + +0.6
1,818 - -0.0
1,851 - +0.3
1,874 + +0.7
1,881 - -0.1
1,885 - -0.3
1,891 - -2.3
1,896 - +0.7
1,912 + +1.1
1,912 + +1.0
1,914 - -0.6
1,916 - -1.5
1,917 - +0.1
1,919 + +0.9
1,922 - +1.8
1,923 - -0.6
1,934 - +0.9
1,935 + -0.7
1,938 - -0.2
1,938 - -0.1
1,940 - +0.2
1,941 + +0.6
1,941 + +0.2
1,942 + -1.5
1,943 - -1.0
1,944 + +0.6
1,944 - -0.2
1,945 - +0.8
1,945 + -0.1
1,946 - -0.4
1,947 + +1.2
1,960 - -0.3
1,968 + -1.2
1,980 + +0.7
2,015 + -1.5
2,067 - +1.5
2,081 - -0.5
2,091 + +1.5
2,220 + -0.7
2,229 - +1.9
2,235 - +0.5
2,237 - +1.5
2,242 + -2.1
2,242 - +0.2
2,245 - +2.2
2,248 - +0.7
2,251 + +2.8
2,254 - -0.2
2,261 + +0.2
2,262 - -1.9
2,266 + +1.2
2,268 + -0.5
2,400 + 11538 mRNA_3170 0.21 -0.5
2,401 - 11538 mRNA_3170 0.21 +0.1
2,404 + 11538 mRNA_3170 0.22 -1.6
2,414 + 11538 mRNA_3170 0.23 +1.8
2,420 - 11538 mRNA_3170 0.23 +2.1
2,439 + 11538 mRNA_3170 0.25 +1.4
2,446 + 11538 mRNA_3170 0.26 +2.7
2,470 - 11538 mRNA_3170 0.28 -0.2
2,516 - 11538 mRNA_3170 0.32 -0.2

Or see this region's nucleotide sequence