Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3221

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11589 and 11590 are separated by 120 nucleotides11590 and 11591 are separated by 255 nucleotides mRNA_3221: 11589 - KOG2533 Permease of the major facilitator superfamily, at 134,421 to 136,280 11589 mRNA_3222: 11590 - Hypothetical Protein, at 136,401 to 136,739 11590 mRNA_3223: 11591 - Hypothetical Protein, at 136,995 to 137,729 11591

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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133,682 + -1.8
133,888 - -1.2
134,859 + 11589 mRNA_3221 0.24 +0.2
134,973 - 11589 mRNA_3221 0.30 -0.3
135,448 + 11589 mRNA_3221 0.55 -1.8
135,774 + 11589 mRNA_3221 0.73 +0.3
135,915 - 11589 mRNA_3221 0.80 +0.6
135,922 + 11589 mRNA_3221 0.81 +0.5
137,122 - 11591 mRNA_3223 0.17 -0.7

Or see this region's nucleotide sequence