Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3238

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11605 and 11606 are separated by 135 nucleotides11606 and 11607 are separated by 141 nucleotides mRNA_3237: 11605 - K10357 MYO5 myosin V, at 176,488 to 184,590 11605 mRNA_3238: 11606 - BLAST RNA replication protein [Rhizoctonia solani], at 184,726 to 188,428 11606 mRNA_3239: 11607 - K15425 PPP4R2 serine/threonine-protein phosphatase 4 regulatory subunit 2, at 188,570 to 189,872 11607

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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183,873 - -1.2
184,060 + -1.0
184,071 - +1.1
184,499 - -1.7
184,501 + -0.5
184,503 + -0.4
184,538 + -0.5
184,766 - -0.9
184,777 + -1.1
184,797 + -0.6
184,834 - -0.2
184,931 + -1.2
184,949 + +0.9
185,051 + +0.1
185,414 - 11606 mRNA_3238 0.19 -0.3
185,529 + 11606 mRNA_3238 0.22 -2.1
185,540 + 11606 mRNA_3238 0.22 -0.4
185,547 + 11606 mRNA_3238 0.22 -1.7
185,885 - 11606 mRNA_3238 0.31 +1.2
185,933 - 11606 mRNA_3238 0.33 +0.5
185,949 + 11606 mRNA_3238 0.33 +0.1
185,966 - 11606 mRNA_3238 0.33 +0.2
186,020 + 11606 mRNA_3238 0.35 -1.6
186,258 - 11606 mRNA_3238 0.41 +0.1
186,390 + 11606 mRNA_3238 0.45 -1.4
186,506 - 11606 mRNA_3238 0.48 -0.9
186,537 + 11606 mRNA_3238 0.49 -0.7
186,587 - 11606 mRNA_3238 0.50 +2.4
186,650 - 11606 mRNA_3238 0.52 -2.3
186,730 - 11606 mRNA_3238 0.54 -0.6
186,948 - 11606 mRNA_3238 0.60 +1.5
187,002 + 11606 mRNA_3238 0.61 -0.5
187,014 + 11606 mRNA_3238 0.62 -0.1
187,110 - 11606 mRNA_3238 0.64 -0.7
187,266 - 11606 mRNA_3238 0.69 -2.3
187,304 + 11606 mRNA_3238 0.70 -0.3
187,308 + 11606 mRNA_3238 0.70 -0.2
187,310 + 11606 mRNA_3238 0.70 -1.3
187,439 - 11606 mRNA_3238 0.73 +2.6
187,714 + 11606 mRNA_3238 0.81 +1.2
187,717 - 11606 mRNA_3238 0.81 +2.3
187,720 + 11606 mRNA_3238 0.81 +1.0
188,288 + -0.4
188,346 + -0.6
188,674 + -1.0
188,680 - -1.2
188,738 - 11607 mRNA_3239 0.13 +1.1
188,782 + 11607 mRNA_3239 0.16 +0.1
188,789 + 11607 mRNA_3239 0.17 -0.4
188,792 - 11607 mRNA_3239 0.17 +0.2
188,985 + 11607 mRNA_3239 0.32 +2.2
189,049 - 11607 mRNA_3239 0.37 +0.5
189,207 - 11607 mRNA_3239 0.49 +1.5
189,221 - 11607 mRNA_3239 0.50 +2.5
189,348 + 11607 mRNA_3239 0.60 +0.4
189,385 - 11607 mRNA_3239 0.63 -0.4

Or see this region's nucleotide sequence