Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3242

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11609 and 11610 are separated by 114 nucleotides11610 and 11611 are separated by 385 nucleotides mRNA_3241: 11609 - SUPERFAMILY--SSF52047, at 192,497 to 194,768 11609 mRNA_3242: 11610 - K01814 hisA phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, at 194,883 to 196,226 11610 mRNA_3243: 11611 - K10752 RBBP4, HAT2, CAF1, MIS16 histone-binding protein RBBP4, at 196,612 to 198,456 11611

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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193,933 - 11609 mRNA_3241 0.63 +2.9
193,955 + 11609 mRNA_3241 0.64 +0.7
193,957 - 11609 mRNA_3241 0.64 -1.5
193,961 + 11609 mRNA_3241 0.64 +0.9
194,211 + 11609 mRNA_3241 0.75 +0.3
194,459 + 11609 mRNA_3241 0.86 +0.8
194,509 - 11609 mRNA_3241 0.89 +0.8
196,405 - +0.2
196,431 + -0.5
196,439 + +0.1
196,563 + -0.1
196,571 + +0.0
196,582 + -0.6

Or see this region's nucleotide sequence