Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3245

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11612 and 11613 are separated by 459 nucleotides mRNA_3244: 11612 - Hypothetical Protein, at 199,306 to 200,606 11612 mRNA_3245: 11613 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702, at 201,066 to 204,037 11613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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200,108 + 11612 mRNA_3244 0.62 -2.2
200,206 + 11612 mRNA_3244 0.69 +0.6
200,479 + -0.1
200,500 - +1.3
200,515 - +0.1
200,553 - -0.6
200,597 + +0.1
201,006 - +0.8
201,130 - +1.5
202,039 + 11613 mRNA_3245 0.33 +0.4
202,325 + 11613 mRNA_3245 0.42 -0.4
202,630 + 11613 mRNA_3245 0.53 +0.6
202,767 - 11613 mRNA_3245 0.57 +0.4
203,376 - 11613 mRNA_3245 0.78 +1.5
203,509 + 11613 mRNA_3245 0.82 +2.7
203,657 - 11613 mRNA_3245 0.87 +1.4
203,661 + 11613 mRNA_3245 0.87 +2.4
203,790 - +2.8
203,799 - +2.0
203,946 + +0.9
203,947 + +2.8
204,103 - +0.6
204,225 - +0.5
204,225 - -0.2
204,225 - -1.2
204,234 - -0.4
204,235 - -0.6
204,238 + -1.9
204,250 - -1.4
204,251 + +0.4
204,270 + +0.1
204,278 + +0.6
204,280 + -0.6
204,286 - +0.1
204,290 - -1.2
204,291 - -0.1
204,298 + -0.3
204,314 + +0.9
204,335 - +1.3
204,357 - -1.4
204,383 - +0.0
204,393 - +0.3
204,412 + -2.0
204,437 - -0.3
204,443 - +2.4
204,445 + +1.3
204,447 - +1.0
204,448 + +0.9
204,448 - +0.5
204,454 + +0.0
204,454 + -0.2
204,455 - +1.0
204,463 + +1.3
204,468 - -1.8
204,473 + -0.8
204,479 + +1.7
204,484 - +2.2
204,491 - -0.1
204,511 - -1.2
204,528 - -0.8
204,534 - -1.9
204,547 - -0.7
204,557 + +1.0
204,639 + -1.4
204,647 + +0.4
204,652 - +0.1
204,654 + -0.7
204,664 - -0.8
204,665 + -0.4
204,678 + -0.7
204,695 + +0.4
204,699 + +0.3
204,724 - +3.1
204,727 + +0.2
204,801 - -3.9
204,811 + -1.2
204,826 + -2.6
204,957 - +0.8

Or see this region's nucleotide sequence