Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3271

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11638 and 11639 are separated by 613 nucleotides11639 and 11640 are separated by 311 nucleotides mRNA_3270: 11638 - Hypothetical Protein, at 252,078 to 253,678 11638 mRNA_3271: 11639 - K07126 K07126 uncharacterized protein, at 254,292 to 257,031 11639 mRNA_3272: 11640 - Hypothetical Protein, at 257,343 to 259,236 11640

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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253,322 + 11638 mRNA_3270 0.78 -0.5
253,592 + +1.1
253,742 + +0.6
253,752 + +0.1
253,859 + +3.2
254,012 - -1.5
254,028 - +2.0
254,034 + -0.5
254,036 - -1.4
254,039 - +1.0
254,046 - -3.3
254,051 - -0.1
254,058 + +0.1
254,179 - +0.3
254,475 - -1.7
254,476 + +0.9
254,616 - 11639 mRNA_3271 0.12 +0.4
254,621 + 11639 mRNA_3271 0.12 +0.3
254,624 - 11639 mRNA_3271 0.12 -0.4
254,748 - 11639 mRNA_3271 0.17 +0.4
254,758 - 11639 mRNA_3271 0.17 -0.6
254,767 + 11639 mRNA_3271 0.17 +1.3
254,894 + 11639 mRNA_3271 0.22 +2.9
255,073 + 11639 mRNA_3271 0.29 -2.4
255,204 - 11639 mRNA_3271 0.33 -0.1
255,207 + 11639 mRNA_3271 0.33 -0.1
255,352 + 11639 mRNA_3271 0.39 -2.1
256,647 - 11639 mRNA_3271 0.86 +0.4
256,648 + 11639 mRNA_3271 0.86 +0.2
256,796 - +0.4
257,106 + +1.5
257,245 - +0.3

Or see this region's nucleotide sequence