Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3311

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11678 and 11679 are separated by 139 nucleotides11679 and 11680 are separated by 375 nucleotides mRNA_3310: 11678 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 363,759 to 365,853 11678 mRNA_3311: 11679 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 365,993 to 367,448 11679 mRNA_3312: 11680 - Hypothetical Protein, at 367,824 to 368,675 11680

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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365,271 - 11678 mRNA_3310 0.72 -1.1
365,734 + -0.4
366,051 + +0.4
366,104 + -0.1
366,354 + 11679 mRNA_3311 0.25 +0.5
366,431 + 11679 mRNA_3311 0.30 +0.6
366,434 - 11679 mRNA_3311 0.30 +0.3
366,474 - 11679 mRNA_3311 0.33 -0.5
366,867 - 11679 mRNA_3311 0.60 +0.5
366,940 + 11679 mRNA_3311 0.65 -1.2
367,077 + 11679 mRNA_3311 0.74 +0.8
367,302 + 11679 mRNA_3311 0.90 -1.4
367,340 + -0.2
367,394 - -0.3
367,508 - -0.1
367,517 - -2.0
367,523 - +0.2
367,529 - -0.0
367,534 - +1.0
367,550 - -0.5
367,550 + -0.4
367,835 - -0.9
368,002 - 11680 mRNA_3312 0.21 +1.2
368,003 + 11680 mRNA_3312 0.21 +0.2
368,431 + 11680 mRNA_3312 0.71 +0.0

Or see this region's nucleotide sequence