Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3396

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11763 and 11764 are separated by 562 nucleotides11764 and 11765 are separated by 325 nucleotides mRNA_3395: 11763 - K07566 tsaC, rimN, SUA5 L-threonylcarbamoyladenylate synthase, at 575,450 to 577,006 11763 mRNA_3396: 11764 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 577,569 to 578,953 11764 mRNA_3397: 11765 - K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+), at 579,279 to 580,457 11765

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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577,149 + +1.5
577,284 - -1.7
577,292 + -1.5
577,293 + -0.3
577,423 - -2.0
577,714 - 11764 mRNA_3396 0.10 +0.1
577,715 + 11764 mRNA_3396 0.11 -0.2
577,916 + 11764 mRNA_3396 0.25 -0.3
577,977 + 11764 mRNA_3396 0.29 +0.9
577,993 - 11764 mRNA_3396 0.31 -0.2
578,038 + 11764 mRNA_3396 0.34 +0.9
578,149 + 11764 mRNA_3396 0.42 -0.1
578,184 + 11764 mRNA_3396 0.44 +0.4
578,282 + 11764 mRNA_3396 0.51 +0.5
578,323 - 11764 mRNA_3396 0.54 +0.9
578,414 + 11764 mRNA_3396 0.61 +0.3
578,724 + 11764 mRNA_3396 0.83 -0.1
578,845 - +0.0
578,848 + +0.1
578,877 + +1.1
579,131 + -1.3
579,137 - +0.6
579,148 - +0.0
579,181 + -0.0
579,214 + +2.4
579,239 + +0.6
579,311 - -0.4
579,442 - 11765 mRNA_3397 0.14 +1.6
579,446 + 11765 mRNA_3397 0.14 +0.0
579,639 + 11765 mRNA_3397 0.31 +0.1
579,655 - 11765 mRNA_3397 0.32 -1.3
579,739 - 11765 mRNA_3397 0.39 -0.8
579,748 + 11765 mRNA_3397 0.40 -1.0
579,776 - 11765 mRNA_3397 0.42 -1.2
579,878 - 11765 mRNA_3397 0.51 +0.4
579,923 - 11765 mRNA_3397 0.55 +1.7
579,923 + 11765 mRNA_3397 0.55 +1.2
579,924 - 11765 mRNA_3397 0.55 +1.8

Or see this region's nucleotide sequence