Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3419

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11787 and 11788 are separated by 390 nucleotides mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50,010 to 53,314 11787 mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53,705 to 57,912 11788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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49,097 - +1.1
49,103 + -0.0
49,180 + -0.7
49,194 - -0.4
49,195 + +1.5
49,214 + -0.4
49,325 - +0.7
49,349 - +0.7
49,371 + -0.6
49,372 + -1.6
49,376 - -2.0
49,376 - -0.2
49,378 - -0.3
49,378 - -1.0
49,379 - +0.7
49,384 + -2.3
49,387 + -0.8
49,393 - -0.1
49,396 - +0.3
49,398 + -0.6
49,400 + -0.7
49,402 + -0.1
49,406 + +0.2
49,407 + -0.1
49,409 + +1.6
49,409 + +1.0
49,420 - -2.2
49,472 - -0.0
49,496 - -0.8
49,503 - -0.1
49,505 + +1.2
49,505 + -0.5
49,508 - -0.2
49,524 + +0.2
49,527 + -0.1
49,532 - -0.2
49,534 - +0.6
49,574 + +0.3
49,582 + +1.3
49,605 + -2.1
49,610 + -0.8
49,626 - +0.4
49,626 - -0.8
49,627 - -0.4
49,627 - -0.4
49,629 + -0.6
49,638 - +0.4
49,644 + +0.6
49,663 + +1.2
49,736 - -1.7
49,754 - +0.5
49,766 - -0.7
49,776 + -0.3
49,777 - -0.9
49,784 - -0.1
49,803 - -1.7
49,926 + +0.4
49,933 + +0.1
49,935 - -0.4
49,943 + -0.5
50,075 - -1.1
50,081 - -0.8
50,084 + -0.6
50,089 + -0.6
50,116 + -0.7
50,240 + -0.3
50,240 - -0.5
50,241 + -1.3
50,247 + -2.0
50,269 - +0.5
50,273 - -1.8
50,417 + 11787 mRNA_3419 0.12 -1.4
50,555 + 11787 mRNA_3419 0.16 -1.0
50,701 + 11787 mRNA_3419 0.21 +0.8
50,973 + 11787 mRNA_3419 0.29 -0.7
50,982 - 11787 mRNA_3419 0.29 +0.3
51,462 - 11787 mRNA_3419 0.44 -0.5
52,264 - 11787 mRNA_3419 0.68 -0.3
52,421 - 11787 mRNA_3419 0.73 -1.4
52,581 - 11787 mRNA_3419 0.78 -1.6
52,610 - 11787 mRNA_3419 0.79 -0.2
52,981 - 11787 mRNA_3419 0.90 -0.0
53,417 - +0.1
53,602 - +0.3
53,604 - -0.0
53,609 + -0.6
53,615 - -0.9
53,615 - +0.7
53,616 - -0.7
53,624 + -0.8

Or see this region's nucleotide sequence