Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3461

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11828 and 11829 are separated by 390 nucleotides11829 and 11830 are separated by 517 nucleotides mRNA_3460: 11828 - HMMPfam-Fasciclin domain-PF02469,SUPERFAMILY--SSF82153, at 151,624 to 153,827 11828 mRNA_3461: 11829 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 154,218 to 156,143 11829 mRNA_3462: 11830 - K17978 NUM1 nuclear migration protein NUM1, at 156,661 to 162,747 11830

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
153,331 - 11828 mRNA_3460 0.77 -0.1
153,332 + 11828 mRNA_3460 0.77 +0.9
153,334 + 11828 mRNA_3460 0.78 +0.0
153,344 - 11828 mRNA_3460 0.78 -0.1
153,345 - 11828 mRNA_3460 0.78 +0.1
153,477 + 11828 mRNA_3460 0.84 +0.1
153,517 + 11828 mRNA_3460 0.86 -0.9
153,525 + 11828 mRNA_3460 0.86 +1.6
153,646 + +1.3
153,753 - +1.1
153,775 - +2.3
153,793 - +1.9
153,801 - -0.1
153,808 - -1.4
153,909 - +0.7
153,916 + -0.6
153,939 - -0.1
154,078 + +0.6
154,215 + +1.6
154,351 - +0.3
154,369 - -0.2
154,376 + +0.0
154,963 + 11829 mRNA_3461 0.39 -1.6
155,158 - 11829 mRNA_3461 0.49 +0.3
155,303 - 11829 mRNA_3461 0.56 +0.0
155,431 - 11829 mRNA_3461 0.63 +1.5
155,765 + 11829 mRNA_3461 0.80 -0.7
155,847 - 11829 mRNA_3461 0.85 -2.3
156,002 + +0.2
156,017 + -0.5
156,019 - -1.1
156,054 + +1.9
156,226 - -0.3
156,308 + -0.2
156,316 - +0.2
156,317 + +1.3
156,320 + +0.3
156,476 + -0.1

Or see this region's nucleotide sequence