Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3539

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11907 and 11908 are separated by 384 nucleotides mRNA_3539: 11907 - K12663 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, at 4,641 to 6,092 11907 mRNA_3540: 11908 - K00784 rnz ribonuclease Z, at 6,477 to 8,169 11908

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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3,721 - -1.2
3,731 - +0.6
3,737 + -3.1
3,737 + -0.1
3,737 + -0.7
3,740 - +0.9
3,941 - -2.2
4,323 + +0.6
4,335 - -0.3
4,434 + +2.5
4,440 - -0.3
4,643 - -0.3
4,804 - 11907 mRNA_3539 0.11 +0.4
4,809 + 11907 mRNA_3539 0.12 +0.4
4,813 - 11907 mRNA_3539 0.12 +0.2
4,918 - 11907 mRNA_3539 0.19 -0.6
5,027 + 11907 mRNA_3539 0.27 -0.2
5,038 + 11907 mRNA_3539 0.27 +1.5
5,044 - 11907 mRNA_3539 0.28 +1.1
5,053 + 11907 mRNA_3539 0.28 +0.7
5,059 + 11907 mRNA_3539 0.29 +0.3
5,071 - 11907 mRNA_3539 0.30 +0.2
5,080 - 11907 mRNA_3539 0.30 +0.4
5,103 + 11907 mRNA_3539 0.32 +1.1
5,130 - 11907 mRNA_3539 0.34 -0.6
5,206 - 11907 mRNA_3539 0.39 +0.5
5,230 + 11907 mRNA_3539 0.41 -0.6
5,236 + 11907 mRNA_3539 0.41 +2.1
5,394 + 11907 mRNA_3539 0.52 -1.8
5,395 + 11907 mRNA_3539 0.52 -0.4
5,498 + 11907 mRNA_3539 0.59 -0.8
5,519 - 11907 mRNA_3539 0.60 +0.3
5,520 - 11907 mRNA_3539 0.61 -0.0
5,535 - 11907 mRNA_3539 0.62 +0.6
5,538 - 11907 mRNA_3539 0.62 +0.3
5,575 + 11907 mRNA_3539 0.64 +0.3
5,695 - 11907 mRNA_3539 0.73 -1.9
5,764 - 11907 mRNA_3539 0.77 -0.7
5,808 - 11907 mRNA_3539 0.80 -2.0
5,822 - 11907 mRNA_3539 0.81 +1.2
5,827 - 11907 mRNA_3539 0.82 -0.2
5,838 - 11907 mRNA_3539 0.82 -1.2
5,842 - 11907 mRNA_3539 0.83 +0.6
5,932 - 11907 mRNA_3539 0.89 +0.2
6,014 - +0.1
6,067 + +1.6
6,073 - +0.3
6,257 - +0.2
6,357 + -0.3
6,367 + -0.8
6,383 - +0.5
6,398 - -0.3
6,401 - +2.8
6,413 - -0.1
6,459 + -0.2
6,555 - +1.1
6,699 + 11908 mRNA_3540 0.13 +0.3
6,850 - 11908 mRNA_3540 0.22 -0.4
6,886 + 11908 mRNA_3540 0.24 +1.1

Or see this region's nucleotide sequence