Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3589

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11956 and 11957 are separated by 485 nucleotides mRNA_3588: 11956 - KOG0254 Predicted transporter (major facilitator superfamily), at 113,212 to 115,744 11956 mRNA_3589: 11957 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF101908,SUPERFAMILY--SSF81383, at 116,230 to 117,801 11957

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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115,790 - -1.1
116,215 + -0.7
116,230 - -1.4
116,234 + +0.3
116,372 + -0.0
117,133 + 11957 mRNA_3589 0.57 +0.6
117,270 + 11957 mRNA_3589 0.66 +0.4
117,308 - 11957 mRNA_3589 0.69 -0.2
117,377 - 11957 mRNA_3589 0.73 -1.8
117,448 - 11957 mRNA_3589 0.77 -0.6
117,686 - +1.3
117,689 + +0.5
117,693 - +0.1
117,838 + +0.1
117,855 + +1.8
118,129 - +1.3
118,140 + +0.1
118,261 + -0.9
118,287 + -0.4
118,420 + +0.4
118,570 + +0.7
118,732 - +1.0
118,736 + -0.2
118,743 + -0.7
118,745 - -0.6
118,746 - +0.4
118,746 + +0.2
118,747 - -1.7
118,749 + +0.2
118,753 - +2.2
118,753 + +0.0

Or see this region's nucleotide sequence