Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3604

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11971 and 11972 are separated by 191 nucleotides11972 and 11973 are separated by 411 nucleotides mRNA_3603: 11971 - K13628 iscA, ISCA1 iron-sulfur cluster assembly protein, at 151,130 to 151,909 11971 mRNA_3604: 11972 - K10950 ERO1L ERO1-like protein alpha, at 152,101 to 154,380 11972 mRNA_3605: 11973 - K01872 AARS, alaS alanyl-tRNA synthetase, at 154,792 to 158,003 11973

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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151,110 + +1.2
151,111 - +0.0
151,118 + +0.1
151,118 - -1.6
151,983 - -0.7
154,446 - +2.8
154,448 + +0.9
154,451 + +0.6
154,464 - -0.4
154,474 - -1.7
154,475 + +2.5
154,479 + +1.1
154,494 + +1.6
154,503 + +1.2
154,583 - -0.2
154,608 - +0.3
154,615 + -1.0
154,658 + -0.4

Or see this region's nucleotide sequence