Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3650

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12017 and 12018 are separated by 946 nucleotides12018 and 12019 are separated by 222 nucleotides mRNA_3649: 12017 - HMMPfam-Protein of unknown function, DUF604-PF04646, at 253,942 to 255,854 12017 mRNA_3650: 12018 - Hypothetical Protein, at 256,801 to 258,115 12018 mRNA_3651: 12019 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 258,338 to 258,829 12019

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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255,837 - +0.3
255,875 + +0.9
255,995 - +1.3
256,006 - -2.5
256,015 - -0.2
256,020 + -0.3
256,046 + +0.8
256,084 - +2.4
256,131 - -0.4
256,139 + -2.4
256,156 + -1.0
256,262 + +0.3
256,279 - +0.7
256,280 - -0.7
256,282 + -0.1
256,286 + -1.0
256,286 - +0.9
256,287 - +0.8
256,288 + -0.7
256,288 + +0.6
256,297 + +3.7
256,298 + -1.1
256,300 - -0.6
256,301 + +0.0
256,310 - +0.1
256,314 - +0.1
256,327 + +1.0
256,333 - -0.5
256,377 - -0.2
256,379 + +0.8
256,379 + +0.1
256,384 - -0.0
256,393 - +1.3
256,400 + +0.1
256,404 - -0.6
256,435 - -0.7
256,436 - +0.5
256,447 - +1.5
256,450 + +1.2
256,453 + +1.1
256,461 + -0.0
256,463 - -0.6
256,468 + +0.2
256,470 - -0.2
256,475 - +0.3
256,481 - -1.9
256,484 + +0.1
256,486 - +1.4
256,486 - -0.3
256,491 - +1.0
256,492 + -0.3
256,509 - +0.1
256,512 + -0.3
256,522 - +0.5
256,525 + +2.6
256,530 + +0.3
256,542 - -0.3
256,543 - +3.2
256,548 - -1.1
256,555 - -2.0
256,570 - -0.9
256,572 + +0.6
256,574 - -0.5
256,596 + +0.7
256,600 - -0.5
256,606 - +0.8
256,612 - -1.9
256,613 - +0.5
256,614 + +1.9
256,615 - +0.0
256,618 - +0.5
256,620 - +0.1
256,622 + -0.8
256,624 - -0.2
256,627 + +0.6
256,637 + -0.9
256,640 - -1.0
256,644 - -0.6
256,645 - +0.5
256,646 + -0.8
256,655 + +0.5
256,655 - -0.0
256,661 - +1.6
256,661 - +1.0
256,665 - -0.5
256,676 + +1.0
256,681 + +0.3
256,706 + +0.2
256,785 - +0.4
256,825 + +0.0
256,835 - +0.3
256,960 - 12018 mRNA_3650 0.12 +1.2
256,964 - 12018 mRNA_3650 0.12 +0.8
256,966 + 12018 mRNA_3650 0.13 -0.1
256,981 + 12018 mRNA_3650 0.14 -0.9
256,993 + 12018 mRNA_3650 0.15 -0.9
256,998 + 12018 mRNA_3650 0.15 -0.3
257,090 - 12018 mRNA_3650 0.22 +0.1
257,108 + 12018 mRNA_3650 0.23 -0.2
257,109 - 12018 mRNA_3650 0.23 +0.0
257,118 - 12018 mRNA_3650 0.24 -1.1
257,119 - 12018 mRNA_3650 0.24 -1.6
257,119 - 12018 mRNA_3650 0.24 -1.4
257,126 - 12018 mRNA_3650 0.25 -0.1
257,130 + 12018 mRNA_3650 0.25 -0.6
257,137 + 12018 mRNA_3650 0.26 +0.1
257,152 + 12018 mRNA_3650 0.27 -0.1
257,309 - 12018 mRNA_3650 0.39 +0.7
257,313 + 12018 mRNA_3650 0.39 +0.3
257,317 + 12018 mRNA_3650 0.39 -1.6
257,412 + 12018 mRNA_3650 0.46 -1.2
257,579 - 12018 mRNA_3650 0.59 +0.1
257,604 - 12018 mRNA_3650 0.61 -0.5
257,718 - 12018 mRNA_3650 0.70 +0.3
257,736 + 12018 mRNA_3650 0.71 +1.0
257,757 + 12018 mRNA_3650 0.73 -2.4
258,299 + -0.1
258,312 + +0.1
258,459 + 12019 mRNA_3651 0.25 -0.0
258,563 + 12019 mRNA_3651 0.46 -0.6
258,579 - 12019 mRNA_3651 0.49 -0.2
258,584 - 12019 mRNA_3651 0.50 +0.9
258,588 + 12019 mRNA_3651 0.51 +0.6
258,589 + 12019 mRNA_3651 0.51 +1.0
258,590 + 12019 mRNA_3651 0.51 -0.1
258,876 + -1.2
258,882 - -1.0
258,982 - -0.6
259,004 - -0.7
259,010 - +0.6
259,011 + +2.7
259,110 - -0.1

Or see this region's nucleotide sequence