Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3673

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12041 and 12042 are separated by 535 nucleotides mRNA_3673: 12041 - K11251 H2A histone H2A, at 313,222 to 314,004 12041 mRNA_3674: 12042 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 314,540 to 316,836 12042

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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312,623 + +0.1
313,036 + +0.1
313,192 + +2.1
313,638 + 12041 mRNA_3673 0.53 -0.2
313,642 - 12041 mRNA_3673 0.54 +0.8
313,906 - 12041 mRNA_3673 0.87 -0.5
313,919 + 12041 mRNA_3673 0.89 +3.2
314,075 + -0.2
314,202 - -1.9
314,206 + +1.2
314,210 + +1.5
314,228 - +0.4
314,229 + +2.1
314,234 + +0.5
314,235 - +0.5
314,271 - -1.5
314,272 + +1.6
314,278 + +0.5
314,278 + -1.8
314,278 - +1.4
314,279 + -0.3
314,282 - -1.6
314,283 + -0.4
314,285 + -0.1
314,288 - -1.3
314,289 + -0.1
314,297 - +0.9
314,311 - +1.0
314,311 - -0.1
314,312 + +1.0
314,344 + -0.8
314,345 + +0.2
314,351 - +1.6
314,351 - -1.5
314,359 + +1.3
314,376 + -0.2
314,377 + +1.6
314,400 + -0.8
314,465 + -0.6
314,515 + +0.6
314,518 + +1.1
314,522 + +0.5
314,533 - -0.5
314,546 + +0.3
314,675 - +0.7
314,676 + -0.2
314,825 + 12042 mRNA_3674 0.12 -2.4
314,925 + 12042 mRNA_3674 0.17 +0.0
314,966 + 12042 mRNA_3674 0.19 +0.2

Or see this region's nucleotide sequence