Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3680

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12047 and 12048 are separated by 165 nucleotides12048 and 12049 are separated by 139 nucleotides mRNA_3679: 12047 - K02370 EXTL3 alpha-1,4-N-acetylglucosaminyltransferase EXTL3, at 326,327 to 327,835 12047 mRNA_3680: 12048 - Hypothetical Protein, at 328,001 to 330,038 12048 mRNA_3681: 12049 - Hypothetical Protein, at 330,178 to 331,991 12049

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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327,068 + 12047 mRNA_3679 0.49 -0.5
327,069 - 12047 mRNA_3679 0.49 -1.7
327,082 + 12047 mRNA_3679 0.50 +1.3
327,183 - 12047 mRNA_3679 0.57 -1.2
327,201 + 12047 mRNA_3679 0.58 -0.2
327,319 + 12047 mRNA_3679 0.66 -0.6
327,325 + 12047 mRNA_3679 0.66 +1.0
327,609 - 12047 mRNA_3679 0.85 -1.1
327,622 - 12047 mRNA_3679 0.86 +0.6
327,623 - 12047 mRNA_3679 0.86 -1.0
327,628 - 12047 mRNA_3679 0.86 -0.4
327,650 + 12047 mRNA_3679 0.88 -1.4
327,653 - 12047 mRNA_3679 0.88 -0.1
327,656 + 12047 mRNA_3679 0.88 -0.6
327,768 - +0.6
327,772 - +0.6
327,788 + -2.8
327,788 + -0.5
327,913 - -1.0
327,925 - +0.3
327,938 - -0.1
328,125 + -1.1
328,655 - 12048 mRNA_3680 0.32 -0.4
328,659 + 12048 mRNA_3680 0.32 -0.8
328,943 - 12048 mRNA_3680 0.46 -0.6
329,859 - +0.3
330,375 - 12049 mRNA_3681 0.11 +0.5
330,382 + 12049 mRNA_3681 0.11 -1.7

Or see this region's nucleotide sequence