Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3693

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12060 and 12061 are separated by 443 nucleotides mRNA_3692: 12060 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 370,780 to 372,675 12060 mRNA_3693: 12061 - K01714 dapA 4-hydroxy-tetrahydrodipicolinate synthase, at 373,119 to 374,635 12061

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
372,187 + 12060 mRNA_3692 0.74 +0.3
372,318 - 12060 mRNA_3692 0.81 +1.9
372,775 + +0.6
373,050 + -0.3
373,239 - +0.5
373,239 + -0.0
373,803 - 12061 mRNA_3693 0.45 -0.3
373,823 + 12061 mRNA_3693 0.46 +0.8
374,280 + 12061 mRNA_3693 0.77 +0.0
374,282 + 12061 mRNA_3693 0.77 +0.1
374,518 - +0.3
374,520 + -1.2
374,525 - +0.9
374,546 + +2.3
374,549 - +1.1
374,678 - +0.9
374,681 - -0.2
374,688 - -0.1
374,693 + -0.1
374,697 + +1.1
374,698 + +0.2
374,717 + -0.3
374,721 + +0.0
374,724 + +0.1
374,724 - +0.1
374,753 - +1.0
374,773 - -1.3
374,807 - -0.4
374,809 - +1.3
374,810 - +0.1
374,812 - +0.3
374,812 + +0.1
374,813 + -0.7
374,821 - -0.4
374,825 - +0.2
374,829 - +1.0
374,840 + -0.3
374,840 + +0.6

Or see this region's nucleotide sequence