Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3697

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12064 and 12065 are separated by 274 nucleotides12065 and 12066 are separated by 256 nucleotides mRNA_3696: 12064 - SUPERFAMILY--SSF53335, at 380,275 to 383,085 12064 mRNA_3697: 12065 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 383,360 to 385,326 12065 mRNA_3698: 12066 - K10428 DCTN6 dynactin 6, at 385,583 to 386,475 12066

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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382,627 + 12064 mRNA_3696 0.84 +1.5
383,243 + -0.5
383,497 - -0.7
383,516 + -0.3
384,502 - 12065 mRNA_3697 0.58 -2.0
385,219 - +1.0
385,356 + +1.3
385,387 - -0.2
385,401 + -0.6
385,404 - -1.0
385,512 - +0.4
385,525 - -0.3
385,542 + +0.3

Or see this region's nucleotide sequence