Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3711

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12077 and 12078 are separated by 247 nucleotides12078 and 12079 are separated by 38 nucleotides12079 and 12080 are separated by 216 nucleotides mRNA_3709: 12077 - SUPERFAMILY--SSF52540, at 406,586 to 407,790 12077 mRNA_3710: 12078 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 408,038 to 408,694 12078 mRNA_3711: 12079 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 408,733 to 409,937 12079 mRNA_3712: 12080 - K00003 E1.1.1.3 homoserine dehydrogenase, at 410,154 to 411,574 12080

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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407,927 - -0.3
407,937 + +0.6
408,220 + 12078 mRNA_3710 0.28 -1.6
409,234 + 12079 mRNA_3711 0.42 +0.5
409,240 - 12079 mRNA_3711 0.42 +1.1
409,373 + 12079 mRNA_3711 0.53 -0.8
409,574 + 12079 mRNA_3711 0.70 -0.1
409,676 + 12079 mRNA_3711 0.78 -1.3
409,844 - -0.3

Or see this region's nucleotide sequence