Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3730

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3730: 12098 - KOG1268 Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains, at 446,809 to 447,756 12098

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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445,960 + +0.9
446,099 - -0.5
446,191 - +0.3
446,209 - +4.3
446,239 + -1.8
446,395 + +0.7
446,398 - +1.2
446,401 - +1.4
446,525 - +1.5
446,530 + +0.1
446,533 - +0.1
446,537 + -0.8
446,547 - -1.8
446,548 + -1.1
446,548 + +0.2
446,549 + -2.3
446,550 + +0.0
446,551 - -0.4
446,554 + +0.6
446,554 + +2.5
446,554 - -0.8
446,559 - -0.8
446,559 - +0.9
446,561 + +1.3
446,562 + -0.6
446,563 + -0.9
446,563 - -0.1
446,570 + +0.5
446,572 + -1.3
446,572 + -1.9
446,581 - -1.5
446,601 + +0.4
446,622 + -0.2
446,632 + +0.1
446,640 - +0.3
446,765 - +0.2
446,768 + +0.9
446,769 + +0.5
446,774 - +0.3
446,783 - -0.8
446,784 + -0.8
447,792 + +0.9
447,946 - -0.2
448,229 + -0.8
448,244 - -0.5
448,533 + +2.8

Or see this region's nucleotide sequence