Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3752

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12119 and 12120 are separated by 190 nucleotides12120 and 12121 are separated by 176 nucleotides mRNA_3751: 12119 - K11348 BRPF1 bromodomain and PHD finger-containing protein 1, at 499,022 to 503,388 12119 mRNA_3752: 12120 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 503,579 to 505,478 12120 mRNA_3753: 12121 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 505,655 to 508,720 12121

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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502,715 - 12119 mRNA_3751 0.85 +1.8
502,752 + 12119 mRNA_3751 0.85 -1.2
503,338 + -1.4
503,447 - +0.0
503,453 - -0.2
503,466 - +0.3
503,478 - -0.2
503,496 + +0.1
503,505 + -0.9
503,510 + -0.4
503,517 - -0.1
503,520 + +0.9
503,520 + -1.1
503,522 + -0.0
503,523 + +0.5
503,529 + -1.8
503,622 + +0.1
503,624 - +2.8
503,647 - -0.6
503,698 + +0.4
503,806 + 12120 mRNA_3752 0.12 -1.6
503,813 - 12120 mRNA_3752 0.12 +0.4
504,079 - 12120 mRNA_3752 0.26 +0.4
504,108 + 12120 mRNA_3752 0.28 -0.9
504,553 - 12120 mRNA_3752 0.51 +2.6
504,708 + 12120 mRNA_3752 0.59 +0.3
504,779 - 12120 mRNA_3752 0.63 -1.0
504,806 + 12120 mRNA_3752 0.65 -0.4
504,861 - 12120 mRNA_3752 0.67 -1.5
505,449 + -0.7
505,736 - -0.0
505,880 - +1.9
506,282 + 12121 mRNA_3753 0.20 -1.2
506,299 - 12121 mRNA_3753 0.21 -2.6
506,301 - 12121 mRNA_3753 0.21 -3.2

Or see this region's nucleotide sequence