Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3847

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12215 and 12216 are separated by 513 nucleotides mRNA_3847: 12215 - Hypothetical Protein, at 732,647 to 733,359 12215 mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733,873 to 734,892 12216

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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731,673 + +0.9
731,726 - +3.4
731,785 - -1.5
732,199 - +1.2
732,494 + +0.5
732,583 - -0.6
732,584 + +1.3
732,616 - +0.5
733,234 - 12215 mRNA_3847 0.82 +1.3
733,346 + -1.7
733,381 + -0.3
733,491 + +1.0
733,513 + -0.0
733,792 + +2.2
733,792 + +1.0
733,798 + +0.2
733,803 + -0.6
733,803 - -1.4
733,811 + -0.2
733,813 - -0.4
733,816 - +0.2
733,824 - -1.3
733,933 - -0.6
733,946 - +0.8
733,958 - +0.0
733,968 - +0.2
733,971 + -1.5
733,972 - -1.1
734,102 - 12216 mRNA_3848 0.22 +2.1
734,127 + 12216 mRNA_3848 0.25 +2.4
734,129 + 12216 mRNA_3848 0.25 -1.4
734,261 - 12216 mRNA_3848 0.38 +2.2

Or see this region's nucleotide sequence