Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3848

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12215 and 12216 are separated by 513 nucleotides12216 and 12217 are separated by 360 nucleotides mRNA_3847: 12215 - Hypothetical Protein, at 732,647 to 733,359 12215 mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733,873 to 734,892 12216 mRNA_3849: 12217 - Hypothetical Protein, at 735,253 to 736,177 12217

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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733,234 - 12215 mRNA_3847 0.82 +1.3
733,346 + -1.7
733,381 + -0.3
733,491 + +1.0
733,513 + -0.0
733,792 + +2.2
733,792 + +1.0
733,798 + +0.2
733,803 + -0.6
733,803 - -1.4
733,811 + -0.2
733,813 - -0.4
733,816 - +0.2
733,824 - -1.3
733,933 - -0.6
733,946 - +0.8
733,958 - +0.0
733,968 - +0.2
733,971 + -1.5
733,972 - -1.1
734,102 - 12216 mRNA_3848 0.22 +2.1
734,127 + 12216 mRNA_3848 0.25 +2.4
734,129 + 12216 mRNA_3848 0.25 -1.4
734,261 - 12216 mRNA_3848 0.38 +2.2
734,439 - 12216 mRNA_3848 0.55 +0.7
734,683 + 12216 mRNA_3848 0.79 +1.9
734,797 + -0.0
734,841 + +0.2
734,982 - +0.0
735,148 + +0.2
735,170 - -1.7
735,180 + +0.0
735,237 - +1.0
735,274 + -0.8
735,304 - +1.7
735,310 + +1.2
735,312 + -0.0
735,314 + +0.9
735,317 - -1.0
735,327 - +0.1
735,370 - 12217 mRNA_3849 0.13 +0.4
735,396 - 12217 mRNA_3849 0.15 -0.4
735,438 - 12217 mRNA_3849 0.20 +0.5
735,446 + 12217 mRNA_3849 0.21 +1.0
735,456 + 12217 mRNA_3849 0.22 -0.7
735,500 + 12217 mRNA_3849 0.27 -1.5
735,518 - 12217 mRNA_3849 0.29 -0.4
735,521 + 12217 mRNA_3849 0.29 -0.4
735,568 + 12217 mRNA_3849 0.34 -0.6
735,590 - 12217 mRNA_3849 0.36 +2.5
735,605 + 12217 mRNA_3849 0.38 -0.7
735,612 + 12217 mRNA_3849 0.39 +1.5
735,626 + 12217 mRNA_3849 0.40 -0.2
735,668 + 12217 mRNA_3849 0.45 -0.0
735,701 + 12217 mRNA_3849 0.48 -0.1
735,715 + 12217 mRNA_3849 0.50 -0.4
735,794 + 12217 mRNA_3849 0.58 -1.7
735,815 - 12217 mRNA_3849 0.61 -0.3
735,862 - 12217 mRNA_3849 0.66 -0.2

Or see this region's nucleotide sequence