Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3854

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12221 and 12222 are separated by 747 nucleotides12222 and 12223 are separated by 272 nucleotides mRNA_3853: 12221 - K08193 SLC17A MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other, at 746,204 to 748,742 12221 mRNA_3854: 12222 - Hypothetical Protein, at 749,490 to 750,342 12222 mRNA_3855: 12223 - SUPERFAMILY--SSF52047, at 750,615 to 752,769 12223

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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748,648 - +1.0
748,650 + -0.2
748,657 + -1.9
748,782 - +0.4
748,800 + -0.1
748,810 - -0.4
748,814 - +0.2
748,831 + -0.7
748,912 + +0.4
748,914 + +0.3
748,915 - -0.7
748,931 + -0.8
748,935 + -1.1
748,936 - +0.3
748,937 + -0.0
748,939 - -0.8
748,948 + -0.3
748,953 - -0.8
748,976 - -2.5
748,982 + +0.9
748,991 + +1.2
748,998 - +1.9
749,044 + -1.0
749,048 - +0.0
749,057 - -1.5
749,058 - +0.5
749,063 - +0.3
749,068 + +0.4
749,071 + -0.5
749,072 + +0.1
749,089 - +0.7
749,096 + +0.2
749,098 - +0.5
749,225 + +0.5
749,227 - -0.1
749,243 - +0.1
749,251 - +2.5
749,258 - +2.5
749,259 + +0.1
749,263 + +0.5
749,266 + +0.2
749,268 - +0.8
749,283 + -0.9
749,364 - +0.3
749,373 - -0.4
749,374 + -1.7
749,379 + -2.2
749,388 - -0.1
749,392 + +1.1
749,393 - +0.3
749,395 + +0.9
749,402 + +1.2
749,402 + +1.1
749,409 + +1.5
749,416 - -0.9
749,422 + +1.3
749,423 + -0.3
749,425 - -0.2
749,425 + -0.2
749,538 + -0.5
749,583 - 12222 mRNA_3854 0.11 +0.2
749,588 - 12222 mRNA_3854 0.11 -0.6
749,661 - 12222 mRNA_3854 0.20 -1.4
749,852 - 12222 mRNA_3854 0.42 +1.3
749,999 - 12222 mRNA_3854 0.60 -0.8
750,004 + 12222 mRNA_3854 0.60 -1.0
750,021 - 12222 mRNA_3854 0.62 +0.5
750,046 + 12222 mRNA_3854 0.65 +1.0
750,391 + +0.9
751,165 + 12223 mRNA_3855 0.26 +2.4
751,196 + 12223 mRNA_3855 0.27 +1.4

Or see this region's nucleotide sequence