Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3870

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12237 and 12238 are separated by 293 nucleotides12238 and 12239 are separated by 304 nucleotides mRNA_3869: 12237 - KOG3207 Beta-tubulin folding cofactor E, at 787,277 to 789,620 12237 mRNA_3870: 12238 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407,SUPERFAMILY--SSF53448, at 789,914 to 792,634 12238 mRNA_3871: 12239 - K10295 FBXO9 F-box protein 9, at 792,939 to 793,930 12239

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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788,930 - 12237 mRNA_3869 0.71 +2.9
788,964 + 12237 mRNA_3869 0.72 -1.1
789,098 - 12237 mRNA_3869 0.78 +0.3
789,228 + 12237 mRNA_3869 0.83 -0.3
789,386 + +0.9
789,394 + -1.3
789,395 + +0.3
789,709 - +0.8
789,719 + -0.9
789,844 - +0.6
790,002 + -0.6
790,309 - 12238 mRNA_3870 0.15 -0.8
790,350 - 12238 mRNA_3870 0.16 +1.2
790,482 + 12238 mRNA_3870 0.21 +1.8
790,616 - 12238 mRNA_3870 0.26 -0.2
790,656 + 12238 mRNA_3870 0.27 -1.9
790,693 - 12238 mRNA_3870 0.29 -0.0
790,853 + 12238 mRNA_3870 0.35 -0.1
790,879 + 12238 mRNA_3870 0.35 +0.7
791,360 - 12238 mRNA_3870 0.53 -0.0
791,396 + 12238 mRNA_3870 0.54 -0.2
791,694 + 12238 mRNA_3870 0.65 +2.4
791,837 + 12238 mRNA_3870 0.71 -1.3
791,838 - 12238 mRNA_3870 0.71 -1.4
791,928 + 12238 mRNA_3870 0.74 +2.0
792,079 - 12238 mRNA_3870 0.80 +1.2
792,143 + 12238 mRNA_3870 0.82 -0.5
792,238 - 12238 mRNA_3870 0.85 -2.3
792,240 + 12238 mRNA_3870 0.85 -0.1
792,245 - 12238 mRNA_3870 0.86 -0.6
792,246 - 12238 mRNA_3870 0.86 +0.5
792,264 - 12238 mRNA_3870 0.86 -0.7
792,403 - +0.1
792,405 + -0.2
792,419 + +2.0
792,420 - -0.6
792,548 + +0.5
792,553 + -2.9
792,560 - -0.2
792,595 - +0.5
792,608 - +0.1
792,680 - -0.3
792,698 - -0.0
792,700 - +1.1
792,731 - +0.2
792,733 + +2.4
792,757 - -0.4
792,765 + -0.0
792,856 + -1.6
792,879 + -2.3
792,900 - -1.4
792,938 - +1.4
792,950 - +0.4
792,951 + -0.2
793,072 + 12239 mRNA_3871 0.13 -0.7
793,240 - 12239 mRNA_3871 0.30 +3.0
793,269 - 12239 mRNA_3871 0.33 -0.3
793,361 + 12239 mRNA_3871 0.43 -0.8
793,376 - 12239 mRNA_3871 0.44 -0.5
793,423 + 12239 mRNA_3871 0.49 -0.3
793,449 - 12239 mRNA_3871 0.51 -0.9
793,491 - 12239 mRNA_3871 0.56 -0.5
793,498 - 12239 mRNA_3871 0.56 +0.1
793,506 + 12239 mRNA_3871 0.57 +0.2
793,507 + 12239 mRNA_3871 0.57 -0.1
793,518 + 12239 mRNA_3871 0.58 +0.5
793,525 + 12239 mRNA_3871 0.59 -0.5

Or see this region's nucleotide sequence