Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3883

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12250 and 12251 are separated by 702 nucleotides12251 and 12252 are separated by 134 nucleotides mRNA_3882: 12250 - Hypothetical Protein, at 815,200 to 816,864 12250 mRNA_3883: 12251 - K01784 galE, GALE UDP-glucose 4-epimerase, at 817,567 to 820,111 12251 mRNA_3884: 12252 - Hypothetical Protein, at 820,246 to 821,511 12252

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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816,591 - 12250 mRNA_3882 0.84 +0.0
816,601 + 12250 mRNA_3882 0.84 -0.9
816,851 + +0.0
816,857 + -0.6
816,865 + -0.3
816,904 - +0.5
816,915 - +0.0
817,016 + -0.6
817,037 - -0.1
817,040 + +0.1
817,041 - +1.2
817,054 - +0.6
817,060 - -0.7
817,063 + +1.5
817,068 + -2.0
817,068 + -0.2
817,104 + -0.1
817,111 + +1.1
817,112 - -0.2
817,115 + -0.8
817,133 + -1.1
817,141 + +1.2
817,161 - -0.3
817,168 + +0.3
817,169 - +1.0
817,179 + +1.8
817,183 - -0.0
817,195 - -1.4
817,196 + -0.4
817,201 + +1.0
817,274 - -0.3
817,344 + +0.7
817,351 + -1.0
817,372 + +0.8
817,383 + -1.2
817,489 - -0.0
817,501 - -1.4
817,503 + +0.3
817,512 + +0.4
817,518 - +0.2
817,623 - +0.2
817,646 + +0.1
817,651 + -0.4
817,660 + -0.3
817,694 + +0.6
817,831 - 12251 mRNA_3883 0.10 -0.6
817,909 - 12251 mRNA_3883 0.13 -1.0
817,968 + 12251 mRNA_3883 0.16 +0.8
817,975 + 12251 mRNA_3883 0.16 +0.5
818,098 - 12251 mRNA_3883 0.21 +0.5
818,266 + 12251 mRNA_3883 0.27 -0.5
818,463 - 12251 mRNA_3883 0.35 -0.6
818,676 - 12251 mRNA_3883 0.44 +0.5
818,697 - 12251 mRNA_3883 0.44 +0.9
818,829 + 12251 mRNA_3883 0.50 -0.1
818,832 - 12251 mRNA_3883 0.50 -0.3
818,875 + 12251 mRNA_3883 0.51 -0.2
819,026 + 12251 mRNA_3883 0.57 +1.0
819,307 + 12251 mRNA_3883 0.68 -0.8
819,623 - 12251 mRNA_3883 0.81 -0.0
820,020 + -1.8
820,055 - -0.7
820,162 + -0.6
820,203 + +0.8
820,328 - -1.0
820,351 + +2.7
820,560 + 12252 mRNA_3884 0.25 -0.3
820,587 - 12252 mRNA_3884 0.27 +0.3
820,658 - 12252 mRNA_3884 0.33 +0.6
820,914 + 12252 mRNA_3884 0.53 -2.1
820,927 - 12252 mRNA_3884 0.54 +1.7
821,072 + 12252 mRNA_3884 0.65 +0.1

Or see this region's nucleotide sequence