Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3915

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12282 and 12283 are separated by 222 nucleotides12283 and 12284 are separated by 124 nucleotides mRNA_3914: 12282 - HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF48350, at 886,816 to 890,417 12282 mRNA_3915: 12283 - K01062 PLA2G7, PAFAH platelet-activating factor acetylhydrolase, at 890,640 to 892,402 12283 mRNA_3916: 12284 - K02736 PSMB4 20S proteasome subunit beta 7, at 892,527 to 893,886 12284

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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889,712 + 12282 mRNA_3914 0.80 +0.5
890,070 - -0.7
890,269 - -0.3
890,311 + -0.4
890,361 - -0.4
890,423 + +2.9
890,445 - +0.1
890,517 - -2.2
890,725 - -0.7
891,737 + 12283 mRNA_3915 0.62 +1.1
891,879 + 12283 mRNA_3915 0.70 -1.0
891,993 - 12283 mRNA_3915 0.77 +1.8
892,288 + +0.2
892,303 + -0.2
892,447 - -0.3
892,463 + +1.3
892,478 - +1.7

Or see this region's nucleotide sequence