Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3972

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12339 and 12340 are separated by 598 nucleotides12340 and 12341 are separated by 870 nucleotides mRNA_3971: 12339 - K02964 RP-S18e, RPS18 small subunit ribosomal protein S18e, at 1,027,853 to 1,028,767 12339 mRNA_3972: 12340 - K11594 DDX3X, bel ATP-dependent RNA helicase DDX3X, at 1,029,366 to 1,031,642 12340 mRNA_3973: 12341 - HMMPfam-Flavin reductase like domain-PF01613,SMART-Flavin reductase like domain-SM00903,SUPERFAMILY--SSF50475, at 1,032,513 to 1,033,671 12341

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,028,910 - +3.1
1,029,018 + -0.4
1,029,059 + -1.0
1,029,247 - -0.8
1,031,664 - +1.5
1,031,982 - -0.3
1,032,147 - +0.1
1,032,163 + +0.6
1,032,170 - +0.3
1,032,192 + -0.2
1,032,317 + +0.2
1,032,438 + -1.2
1,032,457 - +0.4
1,032,470 + -0.0
1,032,477 - -1.3
1,032,613 + -0.1

Or see this region's nucleotide sequence