Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3987

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3987: 12355 - K08576 CAPN7 calpain-7, at 1,081,981 to 1,082,833 12355

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,081,506 - +0.5
1,081,512 + -1.0
1,081,516 + +0.6
1,081,517 + -0.6
1,081,523 + +1.2
1,081,813 + +0.6
1,081,814 + +0.8
1,081,819 + -0.2
1,081,830 + -0.2
1,081,956 - -3.1
1,081,976 - +0.4
1,082,243 + 12355 mRNA_3987 0.31 -1.1
1,082,574 + 12355 mRNA_3987 0.70 -1.2
1,083,394 + -1.5
1,083,583 - -1.8

Or see this region's nucleotide sequence