Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4133

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12501 and 12502 are separated by 670 nucleotides mRNA_4133: 12501 - Hypothetical Protein, at 1,428,021 to 1,428,981 12501 mRNA_4134: 12502 - Hypothetical Protein, at 1,429,652 to 1,434,767 12502

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,427,037 + +0.5
1,427,297 - -0.1
1,427,459 - +0.1
1,427,583 + -2.1
1,427,590 - +0.6
1,427,609 - -0.8
1,427,609 - -0.0
1,427,732 - +0.4
1,427,758 + -0.0
1,427,880 - -0.3
1,427,888 + -1.4
1,427,890 + +0.6
1,427,890 + -0.7
1,427,895 - -1.2
1,427,898 + -1.3
1,427,898 - -1.2
1,427,898 - +0.2
1,427,907 - -1.0
1,427,907 - -0.2
1,427,910 - -0.5
1,427,910 + +0.3
1,427,911 + +1.5
1,427,911 + +0.6
1,427,911 - +0.3
1,427,911 - +0.9
1,427,912 - +1.8
1,427,912 + +0.2
1,427,914 + -0.9
1,427,916 + -1.8
1,427,927 + -0.3
1,427,928 + +0.0
1,427,929 + -2.3
1,427,931 + +2.0
1,427,932 + -0.1
1,427,936 + -0.1
1,427,942 - +1.3
1,427,952 + +0.2
1,427,953 - +0.0
1,427,981 + -1.0
1,428,177 + 12501 mRNA_4133 0.16 +0.0
1,428,223 - 12501 mRNA_4133 0.21 -0.4
1,428,226 + 12501 mRNA_4133 0.21 +0.2
1,428,238 - 12501 mRNA_4133 0.23 +1.5
1,428,246 - 12501 mRNA_4133 0.23 -0.1
1,428,246 - 12501 mRNA_4133 0.23 +0.9
1,428,248 - 12501 mRNA_4133 0.24 +2.1
1,428,249 + 12501 mRNA_4133 0.24 -2.1
1,428,260 - 12501 mRNA_4133 0.25 -2.8
1,428,261 - 12501 mRNA_4133 0.25 -0.1
1,428,283 - 12501 mRNA_4133 0.27 -0.3
1,428,284 + 12501 mRNA_4133 0.27 +1.1
1,428,292 - 12501 mRNA_4133 0.28 +1.1
1,428,295 + 12501 mRNA_4133 0.29 -0.4
1,428,295 - 12501 mRNA_4133 0.29 +0.0
1,428,295 - 12501 mRNA_4133 0.29 +0.7
1,428,295 - 12501 mRNA_4133 0.29 -0.4
1,428,297 - 12501 mRNA_4133 0.29 -0.3
1,428,297 - 12501 mRNA_4133 0.29 -0.0
1,428,297 - 12501 mRNA_4133 0.29 +0.0
1,428,298 + 12501 mRNA_4133 0.29 -0.3
1,428,298 + 12501 mRNA_4133 0.29 +2.6
1,428,298 + 12501 mRNA_4133 0.29 -0.2
1,428,300 - 12501 mRNA_4133 0.29 +0.9
1,428,300 - 12501 mRNA_4133 0.29 +0.3
1,428,300 - 12501 mRNA_4133 0.29 -0.7
1,428,301 + 12501 mRNA_4133 0.29 -0.3
1,428,302 - 12501 mRNA_4133 0.29 +0.4
1,428,303 + 12501 mRNA_4133 0.29 +0.8
1,428,304 + 12501 mRNA_4133 0.29 -2.0
1,428,309 - 12501 mRNA_4133 0.30 -0.2
1,428,310 + 12501 mRNA_4133 0.30 +1.1
1,428,310 - 12501 mRNA_4133 0.30 +0.5
1,428,314 + 12501 mRNA_4133 0.30 +1.0
1,428,320 - 12501 mRNA_4133 0.31 +0.5
1,428,334 - 12501 mRNA_4133 0.33 +0.2
1,428,340 - 12501 mRNA_4133 0.33 -2.3
1,428,346 - 12501 mRNA_4133 0.34 +0.4
1,428,353 - 12501 mRNA_4133 0.35 -0.1
1,428,365 - 12501 mRNA_4133 0.36 +0.9
1,428,370 + 12501 mRNA_4133 0.36 +1.0
1,428,410 - 12501 mRNA_4133 0.40 +1.1
1,428,473 - 12501 mRNA_4133 0.47 +0.2
1,428,481 - 12501 mRNA_4133 0.48 +0.2
1,428,500 - 12501 mRNA_4133 0.50 +2.5
1,428,504 - 12501 mRNA_4133 0.50 +0.2
1,428,507 - 12501 mRNA_4133 0.51 +2.0
1,428,520 + 12501 mRNA_4133 0.52 +1.1
1,428,522 - 12501 mRNA_4133 0.52 +0.1
1,428,536 - 12501 mRNA_4133 0.54 +1.6
1,428,655 - 12501 mRNA_4133 0.66 -0.6
1,428,655 - 12501 mRNA_4133 0.66 -0.0
1,428,664 + 12501 mRNA_4133 0.67 +1.5
1,428,664 - 12501 mRNA_4133 0.67 -0.4
1,428,672 + 12501 mRNA_4133 0.68 +0.1
1,428,680 - 12501 mRNA_4133 0.69 +1.2
1,428,685 + 12501 mRNA_4133 0.69 +1.3
1,428,688 + 12501 mRNA_4133 0.69 -0.1
1,428,693 - 12501 mRNA_4133 0.70 +0.2
1,428,696 + 12501 mRNA_4133 0.70 +0.1
1,428,710 + 12501 mRNA_4133 0.72 +0.2
1,428,963 - +1.0
1,428,983 + +0.6
1,429,118 - -0.1
1,429,132 + -0.2
1,429,292 - +0.2
1,429,429 - -0.5

Or see this region's nucleotide sequence