Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4202

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12569 and 12570 are separated by 393 nucleotides mRNA_4201: 12569 - K02913 RP-L33, MRPL33, rpmG large subunit ribosomal protein L33, at 1,596,193 to 1,596,692 12569 mRNA_4202: 12570 - K00249 ACADM, acd acyl-CoA dehydrogenase, at 1,597,086 to 1,599,409 12570

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,596,135 + -0.4
1,596,160 - +1.1
1,596,617 + 12569 mRNA_4201 0.85 -0.9
1,596,771 + -0.7
1,597,062 - +0.9
1,597,637 + 12570 mRNA_4202 0.24 +0.9
1,598,091 + 12570 mRNA_4202 0.43 -1.1
1,598,150 - 12570 mRNA_4202 0.46 +1.0
1,598,211 + 12570 mRNA_4202 0.48 -0.1
1,598,239 + 12570 mRNA_4202 0.50 -0.4
1,598,418 - 12570 mRNA_4202 0.57 -0.7
1,598,689 - 12570 mRNA_4202 0.69 +0.3
1,598,703 + 12570 mRNA_4202 0.70 +0.8
1,598,765 + 12570 mRNA_4202 0.72 -1.5
1,599,266 - +0.6
1,599,276 - +1.2
1,599,501 + -0.2
1,599,546 - -0.5
1,599,701 - +0.5
1,599,704 - +0.1
1,599,708 - +0.5
1,599,711 + -0.5
1,599,719 + +1.3
1,599,727 - +0.7
1,599,727 + +0.4
1,599,732 - +0.4
1,599,735 - -0.8
1,599,755 + -0.7
1,599,760 + +0.0
1,599,780 - +0.5
1,599,799 + +0.9
1,599,867 - +0.6
1,599,869 + +0.6
1,599,871 - -0.2
1,599,879 + +0.8
1,599,885 + +0.5
1,599,885 - +0.8
1,599,892 - -1.1
1,599,892 - +0.1
1,599,897 + -0.8
1,599,899 + -0.4
1,599,902 - -1.0
1,599,909 + -1.0
1,599,925 - +0.0

Or see this region's nucleotide sequence