Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4274

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12641 and 12642 are separated by 244 nucleotides12642 and 12643 are separated by 242 nucleotides mRNA_4273: 12641 - BLAST cellular morphogenesis-related protein [Monilioph..., at 1,767,656 to 1,771,232 12641 mRNA_4274: 12642 - K01720 prpD 2-methylcitrate dehydratase, at 1,771,477 to 1,773,946 12642 mRNA_4275: 12643 - HMMPfam-RhoGEF domain-PF00621,ProSiteProfiles-Dbl homology (DH) domain profile.-PS50010,SUPERFAMILY--SSF48065, at 1,774,189 to 1,777,372 12643

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,770,485 - 12641 mRNA_4273 0.79 -1.5
1,770,485 + 12641 mRNA_4273 0.79 -0.4
1,770,678 - 12641 mRNA_4273 0.84 +0.4
1,770,681 - 12641 mRNA_4273 0.85 -0.7
1,770,686 + 12641 mRNA_4273 0.85 -0.4
1,770,942 - -0.5
1,771,054 - -1.1
1,771,093 + +0.4
1,771,093 + -0.1
1,771,108 - +1.3
1,771,117 - -0.6
1,771,210 - +1.6
1,771,232 - +0.7
1,771,234 + -1.6
1,771,242 - +0.7
1,771,245 + -0.2
1,771,259 + +0.5
1,771,382 + -2.1
1,771,404 - +0.5
1,771,413 - +0.3
1,771,427 + +0.7
1,771,449 + +0.1
1,771,557 - +1.2
1,771,578 - +0.1
1,771,699 - +0.1
1,771,702 + +1.0
1,771,706 + +1.5
1,771,715 + +1.3
1,771,880 + 12642 mRNA_4274 0.16 -1.8
1,772,023 - 12642 mRNA_4274 0.22 -0.8
1,772,302 - 12642 mRNA_4274 0.33 +0.1
1,772,302 + 12642 mRNA_4274 0.33 -0.2
1,772,304 - 12642 mRNA_4274 0.33 -1.9
1,772,336 + 12642 mRNA_4274 0.35 +0.8
1,772,454 - 12642 mRNA_4274 0.40 +1.4
1,772,492 - 12642 mRNA_4274 0.41 -1.7
1,772,593 + 12642 mRNA_4274 0.45 +1.1
1,772,900 - 12642 mRNA_4274 0.58 +0.5
1,773,449 + 12642 mRNA_4274 0.80 +1.0
1,773,451 - 12642 mRNA_4274 0.80 -0.8
1,773,452 + 12642 mRNA_4274 0.80 +0.8
1,773,597 - 12642 mRNA_4274 0.86 -1.2
1,773,600 + 12642 mRNA_4274 0.86 +1.6
1,773,604 + 12642 mRNA_4274 0.86 -0.3
1,773,616 - 12642 mRNA_4274 0.87 +0.9
1,773,619 + 12642 mRNA_4274 0.87 +0.5
1,773,640 + 12642 mRNA_4274 0.88 +0.4
1,773,642 + 12642 mRNA_4274 0.88 -0.6
1,773,661 + 12642 mRNA_4274 0.88 -1.5
1,773,936 + +1.6
1,774,597 - 12643 mRNA_4275 0.13 -0.8
1,774,682 - 12643 mRNA_4275 0.15 -0.7

Or see this region's nucleotide sequence